PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_26.173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 226aa MW: 25870.2 Da PI: 7.6282 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.2e-21 | 83 | 143 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ +e+ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ evm.model.supercontig_26.173 83 RQRWNPTSMQLQILESIYEQgNGTPSKQKIKEITNQLaqhgQISEANVYNWFQNRRARSKR 143 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.6 | 5.4e-33 | 82 | 145 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+Pt+ Q++iLe++y++G tP+k++i++it++L+++G+i+++NV++WFQNr+aR+++kq evm.model.supercontig_26.173 82 TRQRWNPTSMQLQILESIYEQGNGTPSKQKIKEITNQLAQHGQISEANVYNWFQNRRARSKRKQ 145 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-17 | 78 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.722 | 79 | 144 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-13 | 81 | 148 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-18 | 81 | 147 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.8E-19 | 83 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.87E-13 | 83 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MEWQNEAEQV ESAQSQNWLN VKVMTDDQME LLRKQISIYA TICEQLIEMR KAISVHHDFP 60 GIRVGNPYCY QLVGSGGHKI STRQRWNPTS MQLQILESIY EQGNGTPSKQ KIKEITNQLA 120 QHGQISEANV YNWFQNRRAR SKRKQQFQNN IIQSQSPQLL DSPHPTDKKT RSADIIHSYE 180 NLFYQTPDLG IEHLLGKMEA PPSLTSYCLV EPYDTVGSSS PKAFM* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 136 | 144 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_26.173 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902690.1 | 1e-170 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 2e-63 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | V7ART8 | 5e-72 | V7ART8_PHAVU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_26.173 | 1e-169 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17223 | 6 | 11 | Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-56 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_26.173 |
Publications ? help Back to Top | |||
---|---|---|---|
|