PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_259.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 220aa    MW: 24325.5 Da    PI: 9.5493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_259.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18554154
                          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                                 ++++GVr++  +g+Wv+eIr+p        kr++lg+f tae Aaka+++a+  + 
  evm.model.supercontig_259.2  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkKRVWLGTFETAEAAAKAYDQAAILMS 54
                                 59*****999.**********8.....335*********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-22565No hitNo description
Gene3DG3DSA:3.30.730.105.2E-32664IPR001471AP2/ERF domain
SMARTSM003809.5E-39669IPR001471AP2/ERF domain
PfamPF008473.8E-11653IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-20664IPR016177DNA-binding domain
PROSITE profilePS5103221.72663IPR001471AP2/ERF domain
PRINTSPR003674.4E-10718IPR001471AP2/ERF domain
PRINTSPR003674.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPQKKKFRGV RQRQWGSWVS EIRHPLLKKR VWLGTFETAE AAAKAYDQAA ILMSGQNAKT  60
NFPVTKNSGV AIKAKARNNE ADNENQSPLS EKALSELLNE KLKKTCKDGR SPSLTCLRLD  120
TDSSHIGVWQ KRAGSPSNSN WVMRVELGNK KKKQLQTGRK DDQEEEELDG GSLMAMETTS  180
SHGDGIEDDR LALQMIEELL NWNCPITTAS TSANNIAGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17569469ATERF1
3gcc_A3e-17569469ATERF1
5wx9_A4e-176721481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_259.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912511.11e-161ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9581e-75SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A1R3J7T83e-78A0A1R3J7T8_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_259.21e-161(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.22e-68ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]