PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_254.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TALE | ||||||||
Protein Properties | Length: 168aa MW: 19589.3 Da PI: 7.6361 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 6e-10 | 110 | 144 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++++++ LA+ +gL+++q+ +WF N+R ++ evm.model.supercontig_254.5 110 KWPYPTEADKTALAETTGLDQKQINNWFINQRKRH 144 569*****************************985 PP | |||||||
2 | ELK | 31.6 | 3.6e-11 | 65 | 85 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 LK+ Ll KYsgy++sLkqEFs evm.model.supercontig_254.5 65 LKEKLLSKYSGYISSLKQEFS 85 9*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 10.196 | 64 | 84 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.0E-10 | 64 | 85 | IPR005539 | ELK domain |
SMART | SM01188 | 1.5E-6 | 64 | 85 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.617 | 84 | 147 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.21E-20 | 85 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.5E-12 | 86 | 151 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-28 | 89 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.91E-13 | 96 | 148 | No hit | No description |
Pfam | PF05920 | 5.4E-18 | 104 | 143 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MESCHPPPCH VPALFILFHH IHNSYYICMH VHADSKGGGS SEEELSGGDE MDVTECSRMV 60 EDRQLKEKLL SKYSGYISSL KQEFSKKKKK GKLPKEARQL LFDWWNLHYK WPYPTEADKT 120 ALAETTGLDQ KQINNWFINQ RKRHWKPSEN MQFAVMDSLY APFYMDT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_254.5 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912548.1 | 1e-94 | homeobox protein knotted-1-like 6 | ||||
Swissprot | Q84JS6 | 5e-53 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A438KBK2 | 2e-62 | A0A438KBK2_VITVI; Homeobox protein knotted-1-like 6 | ||||
STRING | evm.model.supercontig_254.5 | 1e-125 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM835 | 27 | 85 | Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 5e-45 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_254.5 |
Publications ? help Back to Top | |||
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