PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_25.69 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 40256.2 Da PI: 7.3032 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W+++++ g+ R++k+c++rw +yl evm.model.supercontig_25.69 14 RGLWSPEEDEKLINYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.3e-15 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ evm.model.supercontig_25.69 67 RGSFSPQEAALIIELHSVLGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.595 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.24E-12 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.092 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.86E-11 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 356 aa Download sequence Send to blast |
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHSVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLMSHD 120 HHVSGLPNFN DHMHHDHHHH QQPFFSLNGN PNLILSTPHQ QDQLYLPSPP PQPPVLLQNF 180 GHPDHFRSTS INVNEENLVH HHHILSNSSS IDHSTWTFPY YLPENPISST QENQSFSNDY 240 VKLIDMSRIS LPPYHENALI VPKLCKNILE ANTDNNNLCS NMPSSSSASL EVLDPVMARL 300 LCFPSGPYPH VPQTNQVEYF HETMIMPSSS SSSLSPLSIN QYAANPNVGS TTWDP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_25.69 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM476581 | 3e-34 | AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903049.1 | 0.0 | transcription factor MYB26 | ||||
Swissprot | Q9SPG3 | 2e-77 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A061GC44 | 1e-114 | A0A061GC44_THECC; MYB7 | ||||
TrEMBL | A0A1Q3CXH2 | 1e-114 | A0A1Q3CXH2_CEPFO; Myb_DNA-binding domain-containing protein (Fragment) | ||||
STRING | evm.model.supercontig_25.69 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 2e-81 | myb domain protein 26 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_25.69 |
Publications ? help Back to Top | |||
---|---|---|---|
|