PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_25.41

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 267aa MW: 30076.8 Da PI: 6.1738

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_25.41	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.9	3.4e-38	30	129	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++++l++ e+++am++++ ++++ra+dPv G++++i++ evm.model.supercontig_25.41 30 ACAACKYQRRKCAPDCILAPYFPHDRQQQFLNAHKLFGVSNITKIIRNLDPPEKDAAMRTIIIQSDVRAKDPVGGCCRIIRD 111 7******************************************************************************* PP DUF260 83 lqqqleqlkaelallkee 100 l++q+ +k+el+++ ++ evm.model.supercontig_25.41 112 LHHQILYTKTELDMVLHQ 129 *********9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.585	29	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-36	30	126	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSPTSTTTTK KTTPINIPRI ASNGTTTTQA CAACKYQRRK CAPDCILAPY FPHDRQQQFL 60 NAHKLFGVSN ITKIIRNLDP PEKDAAMRTI IIQSDVRAKD PVGGCCRIIR DLHHQILYTK 120 TELDMVLHQL AICRAQVQQQ QQHLQMQETH ETLACDIVNP DPFASYNSMS YNDYLQPHDQ 180 DQQYVVDDQH QLQQDVNAWA LQDSTLLSSS SSSGNIVKHN LVSECDEHAE PVVEVVGSER 240 HEHIKFEPEE LVETRFVAST QLLISS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-26	31	124	12	105	LOB family transfactor Ramosa2.1
5ly0_B	5e-26	31	124	12	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_25.41

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903006.1	0.0	LOB domain-containing protein 22
Swissprot	Q9LRW1	2e-66	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2N9HL91	2e-91	A0A2N9HL91_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_25.41	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45
Representative plant	OGRP5524	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-58	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_25.41

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]