PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_25.27

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MIKC_MADS

Protein Properties

Length: 258aa MW: 29177.2 Da PI: 6.2887

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_25.27	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.4	4.4e-14	18	66	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +i n+ r+ ++ kR +++ KA+ LS+L d+ v+v+ f+++gkl++++ evm.model.supercontig_25.27 18 FIANNNARNASWKKRIQTLKLKAHQLSTLADVSVSVLCFAPDGKLHTWP 66 799*********************************************8 PP
2	K-box	15.9	5.2e-07	129	164	41	76
K-box 41 edLesLslkeLqqLeqqLekslkkiRskKnellleq 76 ++L++L eL++L +L+ l++ R+++++lll++ evm.model.supercontig_25.27 129 QSLDELPKSELMNLMGRLDFTLQRLRERRDQLLLDK 164 689******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.704	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-4	9	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-15	11	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-5	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.2E-12	18	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-5	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.7E-5	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
METSIPNPTN KRNRSLQFIA NNNARNASWK KRIQTLKLKA HQLSTLADVS VSVLCFAPDG 60 KLHTWPENPT EVKQIVMNYK NCVDRDARQG KWSENVDLSS FLETKKRKIQ EEKSEIDGAK 120 EAESCTSEQS LDELPKSELM NLMGRLDFTL QRLRERRDQL LLDKNNVPLP SDNFAVPGFN 180 DNVGSLQGFG SENQKINNGG SSNFLPGYEM FDYQSMLIPQ FQVVPDHQLM LIPPFQVVCS 240 DLAMLMPSFQ EALPLSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_25.27

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903044.1	0.0	floral homeotic protein AGAMOUS-like
TrEMBL	A0A4D6D257	1e-134	A0A4D6D257_CARPA; Floral homeotic protein
STRING	evm.model.supercontig_25.27	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP12139	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	2e-12	AGAMOUS-like 103

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_25.27