PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_25.124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 515aa MW: 58614.2 Da PI: 6.8849 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 246.8 | 8.6e-76 | 132 | 506 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 ++lL cA a+s+g++ ++q+lL l+el+s +gd+++Rlaa+ ++ALa++l++s ++ p + + ++ +l evm.model.supercontig_25.124 132 EQLLNPCAAAISAGNFVRVQHLLYVLHELQSLKGDANHRLAAHGLKALAQHLSSSPVSIG----PGTFACTEPRFFQRSLI 208 689***************************************************433333....33333222334444444 PP GRAS 83 lfsevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..... 153 f+evsP++ f + +aN+ Il+ +++e + +Hi+D+++s+G+QWp+Ll+aL+ Rp+gpp +RiT++ + +++ evm.model.supercontig_25.124 209 RFYEVSPWFSFPNTIANSSILQILAQEpdrtSSLHILDIGVSHGVQWPTLLEALSRRPGGPPsLVRITVITPTNESdqsia 289 5*************************99887889************************9999678******9777788888 PP GRAS 154 ...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231 + +rL +fA+++++++++nv+ ++l++l+ + +++ +E+l+++ +++lh+l +s+++er ++Lk++ evm.model.supercontig_25.124 290 pfsVGPPGDNFVSRLLRFAKSMNIDLQINVIDNHQLQNLNAQIINTCCDENLIICAQFRLHQLN---HSSPDERAKFLKVL 367 887677889999******************9888*****************************8...66666778****** PP GRAS 232 kslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309 +s +Pk v+++e+++++ n ++F+++f+++++y ++++ds+++ + + r + Er++++ e+ +++ ++g++ + evm.model.supercontig_25.124 368 RSWEPKGVILTENNMECsctNCGDFATGFSRKVDYLWKFLDSTSSAF----KGRESEERRVMEGEAAKALINKGEM----N 440 *************9665437889********************7765....6666666667777788999999998....8 PP GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++ekW er++ea F + ++e++ + ++llrk++ ++++rv+++++++ l Wk++p+ ++S Wr evm.model.supercontig_25.124 441 ESKEKWCERMKEARFLAEVFGEDTIDGGRALLRKYDnNWEMRVDDRNECVGLWWKGQPVSFCSLWR 506 999*********************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.451 | 105 | 485 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-73 | 132 | 506 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MTFEEQNHAS NYALDWLEDS VSFLPSFFDD TYTSDDINNY QLWGQSDQEL DHNLISQLCC 60 FPRHQHHLQF YQYRQLNTPL ILLFLIIHHY PIHGRNERIR AVKNSVGNKK IIKKSTVSSS 120 NNSNGKEGRW AEQLLNPCAA AISAGNFVRV QHLLYVLHEL QSLKGDANHR LAAHGLKALA 180 QHLSSSPVSI GPGTFACTEP RFFQRSLIRF YEVSPWFSFP NTIANSSILQ ILAQEPDRTS 240 SLHILDIGVS HGVQWPTLLE ALSRRPGGPP SLVRITVITP TNESDQSIAP FSVGPPGDNF 300 VSRLLRFAKS MNIDLQINVI DNHQLQNLNA QIINTCCDEN LIICAQFRLH QLNHSSPDER 360 AKFLKVLRSW EPKGVILTEN NMECSCTNCG DFATGFSRKV DYLWKFLDST SSAFKGRESE 420 ERRVMEGEAA KALINKGEMN ESKEKWCERM KEARFLAEVF GEDTIDGGRA LLRKYDNNWE 480 MRVDDRNECV GLWWKGQPVS FCSLWRLDKK ADEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 3e-35 | 128 | 506 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 2e-35 | 128 | 506 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 2e-35 | 128 | 506 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_25.124 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903058.1 | 0.0 | uncharacterized protein LOC110818466 | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2C9W2L4 | 0.0 | A0A2C9W2L4_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_25.124 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10747 | 28 | 34 | Representative plant | OGRP4082 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-161 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_25.124 |
Publications ? help Back to Top | |||
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