PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.118
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRF
Protein Properties Length: 344aa    MW: 38793.1 Da    PI: 8.642
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.118genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.2e-2479122144
                           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                   d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs k++e
  evm.model.supercontig_25.118  79 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSGKPVE 122
                                   79**************************************9987 PP

2QLQ55.71.5e-191347236
                           QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                                  +FTa Q+q+L++Q+l++KyL++++PvPpeL+ +++
  evm.model.supercontig_25.118 13 PFTAIQWQELEHQALIFKYLVSGVPVPPELICFVK 47
                                  9*****************************97776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.8E-91248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.4E-151343IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.2911348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.01879123IPR014977WRC domain
PfamPF088797.5E-2180122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDQRMMSARN RCPFTAIQWQ ELEHQALIFK YLVSGVPVPP ELICFVKRSL QYSSVSSRLF  60
PHQPIGWGYF QMGFGRKADP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGRNRSGKP  120
VEVTNISAPS SSSSSSSSSS SSLSSSISSL SSVKRNFPNI PPTTTTISSS PFSSTSDLYS  180
HTHNDLSHLN PFLYSSSSRL HHPDSDLSLQ NNTTHHNFLD FGSSQSQTDK DFRYFEGTSE  240
GMDEKSFKSF FPEASGSIRN FNNSYQQQPW TTSYKSFPSQ EPSIQHLQTL AYNPNQLHHH  300
DQQHCFVLDN VAKATMMKLY TMAEKVLGSA AEVCAKLWPA EVD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.118
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-47HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755192e-47HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021902969.10.0growth-regulating factor 5
RefseqXP_021902970.10.0growth-regulating factor 5
SwissprotQ8L8A61e-62GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A061GCX36e-99A0A061GCX3_THECC; Growth-regulating factor 5, putative
STRINGevm.model.supercontig_25.1180.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-58growth-regulating factor 5