PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_25.118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRF | ||||||||
Protein Properties | Length: 344aa MW: 38793.1 Da PI: 8.642 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.7 | 1.2e-24 | 79 | 122 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rs k++e evm.model.supercontig_25.118 79 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSGKPVE 122 79**************************************9987 PP | |||||||
2 | QLQ | 55.7 | 1.5e-19 | 13 | 47 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa Q+q+L++Q+l++KyL++++PvPpeL+ +++ evm.model.supercontig_25.118 13 PFTAIQWQELEHQALIFKYLVSGVPVPPELICFVK 47 9*****************************97776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.8E-9 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.4E-15 | 13 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.291 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.018 | 79 | 123 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.5E-21 | 80 | 122 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MDQRMMSARN RCPFTAIQWQ ELEHQALIFK YLVSGVPVPP ELICFVKRSL QYSSVSSRLF 60 PHQPIGWGYF QMGFGRKADP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGRNRSGKP 120 VEVTNISAPS SSSSSSSSSS SSLSSSISSL SSVKRNFPNI PPTTTTISSS PFSSTSDLYS 180 HTHNDLSHLN PFLYSSSSRL HHPDSDLSLQ NNTTHHNFLD FGSSQSQTDK DFRYFEGTSE 240 GMDEKSFKSF FPEASGSIRN FNNSYQQQPW TTSYKSFPSQ EPSIQHLQTL AYNPNQLHHH 300 DQQHCFVLDN VAKATMMKLY TMAEKVLGSA AEVCAKLWPA EVD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_25.118 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 2e-47 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 2e-47 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902969.1 | 0.0 | growth-regulating factor 5 | ||||
Refseq | XP_021902970.1 | 0.0 | growth-regulating factor 5 | ||||
Swissprot | Q8L8A6 | 1e-62 | GRF5_ARATH; Growth-regulating factor 5 | ||||
TrEMBL | A0A061GCX3 | 6e-99 | A0A061GCX3_THECC; Growth-regulating factor 5, putative | ||||
STRING | evm.model.supercontig_25.118 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4567 | 26 | 51 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-58 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_25.118 |