PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_25.115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 25078.4 Da PI: 9.8192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.6e-18 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +l+++++ +G ++W+tIa++ g++R +k+c++rw +yl evm.model.supercontig_25.115 24 KGAWTVEEDAKLAEVIAIHGAKRWNTIAAKAGLNRYGKSCRLRWMNYL 71 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.6 | 4.5e-16 | 77 | 122 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l evm.model.supercontig_25.115 77 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 122 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.418 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 24 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 25 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-9 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 25.672 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 77 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 79 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.13E-10 | 81 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEGGEVKKPI ETKKRMQTHR DVNKGAWTVE EDAKLAEVIA IHGAKRWNTI AAKAGLNRYG 60 KSCRLRWMNY LRPNIKRGNI SDQEEDLILR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS 120 HLSKKIKQQL KEKDSGGSSG RLGFAADQKR RASRDDVKKM VEVKRSEENT NSTICNFNIE 180 EEEEDHSIMG FNMDDFFDFS NEDPLKLEWI SRFVQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 21 | 126 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_25.115 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903057.1 | 1e-148 | transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 2e-51 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2C9UYT2 | 8e-87 | A0A2C9UYT2_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_25.115 | 1e-159 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 8e-54 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_25.115 |