PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.114
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 285aa    MW: 32451.2 Da    PI: 6.18
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.114genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+ Ed++l+d++k++G g+W+  +++ g++R++k+c++rw++yl
  evm.model.supercontig_25.114 14 RGAWTAMEDKILIDYIKLHGDGNWRNLPKKAGLKRCGKSCRLRWLNYL 61
                                  89********************************************97 PP
2Myb_DNA-binding513.4e-1667110146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++
  evm.model.supercontig_25.114  67 RGNITHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                                   7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.812961IPR017930Myb domain
SuperFamilySSF466891.22E-2812108IPR009057Homeodomain-like
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002494.7E-161461IPR001005SANT/Myb domain
CDDcd001673.02E-111661No hitNo description
PROSITE profilePS5129424.25162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2465116IPR009057Homeodomain-like
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002492.5E-1467110IPR001005SANT/Myb domain
CDDcd001678.57E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRKPCCSKE GLNRGAWTAM EDKILIDYIK LHGDGNWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI THDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT KIGKKLQKNQ  120
NSFSTAKTSI NHEAPNIDTS QLVIRTKATR LTKLVVNTPA DPEIVGSSKV DENVINPNFC  180
SELDNSDRDN FMIDVELDHN FLSEFLNTAD GFPLLSDYLE NNNDHGNNNS RRDDHDHDHG  240
HPTTFVSDQD LSFSGNNTLL TDLEFLSSNI MCSLIDSELE WFQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.114
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903055.10.0transcription factor WER-like
TrEMBLA0A061GCW51e-100A0A061GCW5_THECC; Duplicated homeodomain-like superfamily protein, putative
STRINGevm.model.supercontig_25.1140.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-64myb domain protein 3