PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_25.11
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29171.3 Da    PI: 6.5302
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_25.11genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.52.9e-121866250
                                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                 +i n+  r+ ++ kR +++  KA+ L +L d+ v+v+ f+++gkl +++
  evm.model.supercontig_25.11 18 FIANNNARNASWKKRIQTLKLKAHQLATLADVSVSVLCFAPDGKLDTWP 66
                                 799*********************************************8 PP
2K-box14.71.3e-061151642776
                        K-box  27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                                  ei+  ++ +     + L++L   eL+++  +L+  l++ R+++++lll++
  evm.model.supercontig_25.11 115 EIDGVKEAKSCTSEQRLDELPKSELMNMMGRLDFTLQRLRERRDQLLLDK 164
                                  44444444444445689******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.68969IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-4968IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-131186IPR002100Transcription factor, MADS-box
PfamPF003191.4E-101865IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
METSIPNPTN KRNRSLQFIA NNNARNASWK KRIQTLKLKA HQLATLADVS VSVLCFAPDG  60
KLDTWPENPT EVKQIVMNYK NCVDRDPRQG KGSENVDLSS FLETKKRKIQ EEKSEIDGVK  120
EAKSCTSEQR LDELPKSELM NMMGRLDFTL QRLRERRDQL LLDKNNVPLP SDNFAVTGFN  180
DNMGSLQAFC SENEKINNGG SGNFITSCDM FGYQPMLMPP FQVVPDHQLM LIPPFQVVSS  240
DQAMLMPSFQ EPLPLSW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_25.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903041.10.0floral homeotic protein AGAMOUS-like
TrEMBLA0A4D6D2571e-145A0A4D6D257_CARPA; Floral homeotic protein
STRINGevm.model.supercontig_25.110.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1213926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.16e-12AGAMOUS-like 103