PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_25.106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 20911.8 Da PI: 10.3926 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 8.9e-10 | 72 | 121 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 ++WT E +lv++v ++G g+W+ I + Rt ++k++w+++l evm.model.supercontig_25.106 72 QAWTLSEVMKLVEGVSRYGAGRWSEIKKLAFasySYRTSVDLKDKWRNLL 121 79***************************999**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.258 | 66 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-14 | 68 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-9 | 70 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-8 | 72 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.65E-20 | 72 | 122 | No hit | No description |
SuperFamily | SSF46689 | 6.24E-17 | 73 | 131 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSVRLTCLVD VKMEYDKHFV AEPDKNRQIS VVGTVEGRNV GYRHVDSSGD TSDDNVATVP 60 TSKGGLRRKH HQAWTLSEVM KLVEGVSRYG AGRWSEIKKL AFASYSYRTS VDLKDKWRNL 120 LKASFAQAPS DKGANSRKHA SVPIPAPILL RVRQLAEMQA QVPPNVSSSK LVEVGVGGRS 180 VVESSRSGYL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_25.106 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903054.1 | 1e-118 | uncharacterized protein LOC110818463 | ||||
TrEMBL | A0A061GCV6 | 2e-80 | A0A061GCV6_THECC; TRF-like 3, putative isoform 2 | ||||
TrEMBL | A0A061GDL3 | 8e-80 | A0A061GDL3_THECC; TRF-like 3, putative isoform 1 | ||||
STRING | evm.model.supercontig_25.106 | 1e-137 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4364 | 26 | 49 | Representative plant | OGRP1645 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.2 | 1e-52 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_25.106 |