PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_249.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Whirly | ||||||||
Protein Properties | Length: 240aa MW: 26733.7 Da PI: 10.3422 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 198.3 | 1e-61 | 63 | 199 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaa 82 s+yk+kaal++++v+ptf +ldsg l+++r+G ++l++ +a++erkydW+ +q+falsatev+++++l++ +++effhdp++ evm.model.supercontig_249.9 63 SIYKGKAALSMEPVLPTFAKLDSGGLRVDRRGVMMLTFLPAIGERKYDWQSRQKFALSATEVGSFISLGPTGASEFFHDPSM 144 7********************************************************************************* PP Whirly 83 kgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 k+sn+G+v+k+l+v+P++d sG+f++lsv+ns++k+ e+++vPv+ aef v++++ evm.model.supercontig_249.9 145 KSSNAGQVKKTLSVKPHADASGYFISLSVNNSILKTTERITVPVTSAEFQVMKTA 199 *****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 8.9E-73 | 51 | 220 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.73E-64 | 56 | 220 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.3E-57 | 64 | 198 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MLKLSRCSFA RNLLSNKQFL EYGPDVRDAR YLCAFTSRAG VSTTRQNFTA KGNFAGRVFA 60 PYSIYKGKAA LSMEPVLPTF AKLDSGGLRV DRRGVMMLTF LPAIGERKYD WQSRQKFALS 120 ATEVGSFISL GPTGASEFFH DPSMKSSNAG QVKKTLSVKP HADASGYFIS LSVNNSILKT 180 TERITVPVTS AEFQVMKTAC SFALPHIMGW DWLNNQQHKH REINSMRLDS RALDLEWDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 2e-89 | 55 | 216 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 2e-89 | 55 | 216 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 2e-89 | 55 | 216 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 2e-89 | 55 | 216 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_249.9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912604.1 | 1e-180 | single-stranded DNA-binding protein WHY2, mitochondrial isoform X1 | ||||
Swissprot | Q8VYF7 | 1e-94 | WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A2I4FRC2 | 1e-107 | A0A2I4FRC2_JUGRE; single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
STRING | evm.model.supercontig_249.9 | 1e-180 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12358 | 27 | 31 | Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 5e-97 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_249.9 |