PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_235.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C3H | ||||||||
Protein Properties | Length: 300aa MW: 31650.8 Da PI: 9.5271 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.3e-08 | 106 | 131 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ evm.model.supercontig_235.4 106 KTRLCNKYNSAEGCKFGDKCHFAHGE 131 8***********************96 PP | |||||||
2 | zf-CCCH | 35.7 | 1.5e-11 | 266 | 290 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +G+rC+FaHg evm.model.supercontig_235.4 266 FKTKLCENFAK-GSCTFGERCHFAHG 290 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-7 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.8 | 45 | 62 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-14 | 102 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-8 | 103 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.21E-15 | 166 | 245 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 8.0E-12 | 171 | 241 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 5.2E-16 | 172 | 240 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.466 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.3E-11 | 174 | 238 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.67E-14 | 176 | 236 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-16 | 263 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-7 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-8 | 265 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.718 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-9 | 266 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEFGAGRKRG RYEAAFNGNG NIKKSKQDMD SFTTGIGSKS KPCTKFFSTS GCPFGEGCHF 60 LHYVPGGFKA VSQMLNLGTN PALPSAPRNA VVPPSFPDGS SPPAVKTRLC NKYNSAEGCK 120 FGDKCHFAHG EWELGKPSAL AYEDPRAMGH GRMAGRIEQP QGLAAAASFG ASATAKISVD 180 ASLAGAIIGK NGVNSKQICR VTGAKLSIRE HETDSNLRNI ELEGTFDQIK QASAMVRELI 240 VNVGAASAMP ARNHHGTTGS AASNNFKTKL CENFAKGSCT FGERCHFAHG AEELRKSGM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_235.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912693.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-121 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A2C9UEI6 | 1e-172 | A0A2C9UEI6_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_235.4 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2336 | 28 | 75 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 5e-53 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_235.4 |