PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_235.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 300aa    MW: 31650.8 Da    PI: 9.5271
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_235.4genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.3e-08106131227
                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                  kt+lC+ +     Ck+Gd+C+FaHg+
  evm.model.supercontig_235.4 106 KTRLCNKYNSAEGCKFGDKCHFAHGE 131
                                  8***********************96 PP

2zf-CCCH35.71.5e-11266290126
                                  --S---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                  +kt+lC +fa+ G C +G+rC+FaHg
  evm.model.supercontig_235.4 266 FKTKLCENFAK-GSCTFGERCHFAHG 290
                                  69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-14102136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8103135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535104132IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-15166245IPR004088K Homology domain, type 1
SMARTSM003228.0E-12171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.2E-16172240IPR004088K Homology domain, type 1
PROSITE profilePS5008414.466172236IPR004088K Homology domain, type 1
PfamPF000132.3E-11174238IPR004088K Homology domain, type 1
CDDcd001053.67E-14176236No hitNo description
Gene3DG3DSA:4.10.1000.104.4E-16263296IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7265291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-8265295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718265292IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFGAGRKRG RYEAAFNGNG NIKKSKQDMD SFTTGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGFKA VSQMLNLGTN PALPSAPRNA VVPPSFPDGS SPPAVKTRLC NKYNSAEGCK  120
FGDKCHFAHG EWELGKPSAL AYEDPRAMGH GRMAGRIEQP QGLAAAASFG ASATAKISVD  180
ASLAGAIIGK NGVNSKQICR VTGAKLSIRE HETDSNLRNI ELEGTFDQIK QASAMVRELI  240
VNVGAASAMP ARNHHGTTGS AASNNFKTKL CENFAKGSCT FGERCHFAHG AEELRKSGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_235.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912693.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-121C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2C9UEI61e-172A0A2C9UEI6_MANES; Uncharacterized protein
STRINGevm.model.supercontig_235.40.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-53C3H family protein