PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_233.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARR-B | ||||||||
Protein Properties | Length: 225aa MW: 25548.2 Da PI: 9.0951 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 28.9 | 2.5e-09 | 197 | 220 | 1 | 24 |
G2-like 1 kprlrWtpeLHerFveaveqLGGs 24 kprl W++eLH++Fv+av++L Gs evm.model.supercontig_233.20 197 KPRLSWNSELHDKFVDAVQRLAGS 220 79*******************996 PP | |||||||
2 | Response_reg | 65.3 | 2.9e-22 | 29 | 138 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvt 78 vl +d + + ++ l +l++ +y +v++++ ++eal+ l++k+ +D++++D++ + + G+ell+ i e +lp+i+v+ evm.model.supercontig_233.20 29 VLAIDSNIVCLKYLVALLQRCQY-QVTATTIASEALAELRDKRnkYDVVITDVNRYNdVGGFELLEIISLEM-DLPVIMVS 107 67888999999************.***************888888********99988********998755.9******* PP STTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 79 ahgeeedalealkaGakdflsKpfdpeelvk 109 + ++++ + +++k Ga+d++ Kp +e+ + evm.model.supercontig_233.20 108 SDDNKDNIMKCIKHGARDYILKPLRLQEIKN 138 *************************999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 3.3E-31 | 26 | 158 | No hit | No description |
SuperFamily | SSF52172 | 3.42E-25 | 26 | 149 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.5E-19 | 27 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 34.368 | 28 | 144 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.2E-17 | 29 | 138 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.51E-17 | 30 | 143 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-7 | 195 | 219 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSKNEAEFKV SSLEDNGEES SFDPREVRVL AIDSNIVCLK YLVALLQRCQ YQVTATTIAS 60 EALAELRDKR NKYDVVITDV NRYNDVGGFE LLEIISLEMD LPVIMVSSDD NKDNIMKCIK 120 HGARDYILKP LRLQEIKNIW QHVVRKKADH SAEKSGDRKE IRIMDQHRKS NSQMIMIKKR 180 IDGNLKSGAS SSSRGKKPRL SWNSELHDKF VDAVQRLAGS VINN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_233.20 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044007.1 | 2e-69 | PREDICTED: two-component response regulator ARR10-like | ||||
TrEMBL | B9IM11 | 2e-67 | B9IM11_POPTR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_233.20 | 1e-164 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 2e-45 | response regulator 10 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_233.20 |