PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_2304.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 28376.1 Da PI: 9.9413 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 104 | 152 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++g evm.model.supercontig_2304.1 104 YRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 152 9*******.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.709 | 103 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.0E-36 | 103 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 103 | 160 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 103 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.54E-30 | 104 | 159 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 104 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 126 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MCGGAIISDF VPVTTRGRKL TAEELWSELD VFTDLWGLDS MRKEAPKPVD DSKASQTPTN 60 HPNHEKRTSD FTWGFAVVTS EKAEKLSQAA DKPGKTRRPR KNMYRGIRQR PWGKWAAEIR 120 DPHKGVRVWL GTYNTAEEAA RAYDEAAKRI RGDKAKLNFA RPPTPPPPAR TVTQPPPAKK 180 RCISPELARA SLQTTGPPPP PAPAVALQPV YPRYHQVNFG YGNEGYNPSE NELKEQIWTL 240 ETLLGLDRDD QVQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 104 | 159 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-21 | 104 | 159 | 6 | 62 | ATERF1 |
3gcc_A | 5e-21 | 104 | 159 | 6 | 62 | ATERF1 |
5wx9_A | 3e-20 | 91 | 159 | 2 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_2304.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021888308.1 | 1e-156 | ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 8e-57 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2P5R9Q9 | 3e-76 | A0A2P5R9Q9_GOSBA; Uncharacterized protein | ||||
STRING | evm.model.supercontig_2304.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 5e-45 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_2304.1 |