PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_228.17
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 564aa    MW: 61912.4 Da    PI: 8.3847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_228.17genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-1659105148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g WT++Ede l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  evm.model.supercontig_228.17  59 KGGWTPQEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105
                                   688*****************************.************986 PP
2Myb_DNA-binding60.92.6e-19111157148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd++++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
  evm.model.supercontig_228.17 111 KGPWTQEEDDKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                                   79******************************.*************97 PP
3Myb_DNA-binding53.26.6e-17163206146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +++WT +E++ l +a++ +G++ W+ Ia+ ++ gRt++++k++w++
  evm.model.supercontig_228.17 163 KDAWTLDEELALMNAHRVHGNK-WAEIAKVLP-GRTDNSIKNHWNS 206
                                   679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.98254105IPR017930Myb domain
SMARTSM007175.3E-1458107IPR001005SANT/Myb domain
PfamPF002495.9E-1559105IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-1560115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-1861111IPR009057Homeodomain-like
CDDcd001673.66E-1262105No hitNo description
PROSITE profilePS5129432.175106161IPR017930Myb domain
SuperFamilySSF466893.41E-31108204IPR009057Homeodomain-like
SMARTSM007174.1E-18110159IPR001005SANT/Myb domain
PfamPF002499.0E-19111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-27112160IPR009057Homeodomain-like
CDDcd001675.82E-16113157No hitNo description
Gene3DG3DSA:1.10.10.603.9E-23161212IPR009057Homeodomain-like
SMARTSM007171.3E-15162210IPR001005SANT/Myb domain
PROSITE profilePS5129422.073162212IPR017930Myb domain
PfamPF002493.6E-15163206IPR001005SANT/Myb domain
CDDcd001677.66E-12165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAELKVEECC LENKQLTTAS SSSISEGSGS AILKSPAISS PAATSPTHRR TTGPIRRAKG  60
GWTPQEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPDLV KGPWTQEEDD  120
KIIELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLDE ELALMNAHRV  180
HGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KLDFYLATGK LPPVAKNGLQ NGTKDTNRST  240
VTKKLLASSN KDSDSAAQTS SGTTDICKLD EDGKDHIDSL APKQDAAVSS SGLPNESGDS  300
ENVECRPQLS NAGTTCSNLE SVPKFENHGT SSEIVEDTDT GRQLQFGTPT YGSLYYEPPQ  360
FENCIPSDID LFCTCGVSHD CSSGPNISPI CFFTPPCVKD SARGMQSPES ILKIAAKTFP  420
NTPSIFRKRK IVSQGHQIIN KVEKVDAEMV KGRPHASNKH ERAENSSEKS LFENESLCSS  480
PAFRENDVAG PTSKAFNVSP PYRLRSKRTA VFKSVERQLE FSSKKEKSDV NIRSSDLSVN  540
RSSAVSEDCS HTTKLGSDLG HKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_228.17
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021886823.10.0transcription factor MYB3R-3 isoform X1
SwissprotQ6R0321e-180MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A4D6V1720.0A0A4D6V172_9ROSI; MYB transcription factor 33
STRINGevm.model.supercontig_228.170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-169myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]