PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_215.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 273aa    MW: 31052.4 Da    PI: 4.7201
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_215.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.2e-2165118356
                                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                  k++++t+eq++ Le+ F+ ++++  e++++LAkklgL+ rqV vWFqNrRa++k
  evm.model.supercontig_215.3  65 KKRRLTPEQVHLLEKSFAAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 118
                                  5678*************************************************9 PP
2HD-ZIP_I/II132.31.8e-4264154191
                  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 
                                  ekkrrl+ eqv+lLE+sF +e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ k
  evm.model.supercontig_215.3  64 EKKRRLTPEQVHLLEKSFAAENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSLLSNYDSVVK 145
                                  69******************************************************************************** PP

                  HD-ZIP_I/II  83 eveeLreel 91 
                                  e+e+L++e+
  evm.model.supercontig_215.3 146 ENEKLKSEV 154
                                  ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.81560120IPR001356Homeobox domain
SMARTSM003892.8E-2063124IPR001356Homeobox domain
CDDcd000865.94E-1965121No hitNo description
SuperFamilySSF466893.38E-2065131IPR009057Homeodomain-like
PfamPF000464.7E-1865118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-2266127IPR009057Homeodomain-like
PRINTSPR000314.0E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6100116IPR000047Helix-turn-helix motif
PfamPF021833.7E-17120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDSGRLFFDP STCHGNVLFL GNHDSLFRGG RSVINMEEAS RRRPFFSSPE DMFDEEYYDE  60
QLPEKKRRLT PEQVHLLEKS FAAENKLEPE RKTQLAKKLG LQPRQVAVWF QNRRARWKTK  120
QLERDYDLLK SSYDSLLSNY DSVVKENEKL KSEVLSLTVK LEAKEVSTEP VLGQISNPSA  180
AEMVHVSAVQ LSVKVEDRLS SGSGESVVMD EEGPQLLDSG DSYFPSNEYS ACVGTVSKED  240
DGSDDGRSYF SHVFVDADQQ QHEEHLGFWV WQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_215.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386290.0AC238629.1 Carica papaya BAC clone 84J07, complete sequence.
GenBankCP0109880.0CP010988.1 Carica papaya chromosome Y sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887047.10.0homeobox-leucine zipper protein HAT5 isoform X1
SwissprotQ022831e-106HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A061EJ861e-149A0A061EJ86_THECC; Homeobox-leucine zipper protein HAT5
STRINGevm.model.supercontig_215.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-93homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]