PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.70
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 177aa    MW: 19629 Da    PI: 5.0702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.70genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-191159355
                          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a++ l+g
  evm.model.supercontig_21.70 11 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAALHLRG 59
                                 9****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-221068IPR016177DNA-binding domain
PROSITE profilePS5103223.4721067IPR001471AP2/ERF domain
SMARTSM003805.2E-371073IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-321068IPR001471AP2/ERF domain
PfamPF008471.1E-121159IPR001471AP2/ERF domain
CDDcd000184.28E-221169No hitNo description
PRINTSPR003679.4E-131122IPR001471AP2/ERF domain
PRINTSPR003679.4E-134969IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEEHASVGAT YRGVRKRKWG KWVSEIREPG KKTRIWLGSY ETPEMAAAAY DVAALHLRGR  60
GARLNFPELV DSLPRPASSS PEDVQLAAQQ AALRFRRPTM KSSEVTGTAP DGLGLGPVRV  120
GLSASQIQAI NEFPLDSPTM WMELAADHNF HHYDSVIYDD FELSEGEEMQ LDSIWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17872368ATERF1
3gcc_A2e-17872368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.70
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903504.11e-128ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I27e-51ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2N9I7389e-71A0A2N9I738_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_21.701e-128(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-45ERF family protein