PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 163aa    MW: 17916.9 Da    PI: 6.515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-172171155
                          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                 ++ykGVr+++ +g+Wv+eIr+p   g + +r +lg++ t+e Aa a++ a  +l+ 
  evm.model.supercontig_21.63 21 KKYKGVRRRR-WGKWVSEIRVP---G-TqQRLWLGSYSTPEAAAVAHDIAYYCLRR 71
                                 59*****777.**********8...3.35************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-232181No hitNo description
PROSITE profilePS5103221.2592281IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-172282IPR016177DNA-binding domain
SMARTSM003801.5E-262287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-242282IPR001471AP2/ERF domain
PfamPF008477.3E-92270IPR001471AP2/ERF domain
PRINTSPR003671.8E-82334IPR001471AP2/ERF domain
PRINTSPR003671.8E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSNVQAYELA DSAAHGDRDH KKYKGVRRRR WGKWVSEIRV PGTQQRLWLG SYSTPEAAAV  60
AHDIAYYCLR RPSSFEALNF PLTSLPAACA NGELSPRSVQ RAASDAAMAV DARMVVNGLA  120
PSTTTELWVD DESSRNSLWE AASHEQVTVG REALSISVED YF*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.63
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903568.11e-117ethylene-responsive transcription factor ERF020
SwissprotQ9C9I84e-43ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2R6RP895e-53A0A2R6RP89_ACTCH; Ethylene-responsive transcription factor
STRINGevm.model.supercontig_21.631e-116(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-35ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]