PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.26
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 586aa    MW: 62688.1 Da    PI: 7.0284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.26genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08205249144
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                                  r++W++ Ed+ l+ av++ G g+W+ I +      Rt+ q+  rw
  evm.model.supercontig_21.26 205 RKPWSEAEDLELIAAVEKCGEGNWANILKGDFkSDRTASQLSQRW 249
                                  789************************874223566666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-13200253IPR009057Homeodomain-like
PROSITE profilePS5129414.983200257IPR017930Myb domain
SuperFamilySSF466893.52E-12201254IPR009057Homeodomain-like
SMARTSM007174.4E-9204255IPR001005SANT/Myb domain
PfamPF002497.4E-7205249IPR001005SANT/Myb domain
CDDcd116604.00E-14206254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MLEKTKEHGR GFISEEDISS LLQRYSATEV LALLQEVAQY SDAKLDWDAL VQKTTTGISN  60
AREYQMLWRH LAYRDSLTET QDGALPLDDD SDLEYELEAF PHVSTEASSE AAACVKVLIA  120
SGLPCDCNLP NSSTVEAPLT INIPNDPSFR STSEHSQTSR SMRGVNITVP VSVQKQPLPA  180
TTANEGLDAN GSVSGTGSLP PRRKRKPWSE AEDLELIAAV EKCGEGNWAN ILKGDFKSDR  240
TASQLSQRWA IIRKRRNNLN AGANHAGAHR TESQLAATHA ANHAMSLALA GPPAKNLTAV  300
GTASSVASRN SAQPTSIAKA QIVDSNTLQA QDQPPHGTIP TKPSLVRPSN AASKPRISAK  360
KTLVNPNPCS DSAAPTATLA TGMKIARPSD AASLLKPAPG KNIIHIKSSG GLSVKSSLPT  420
NTSTHMKAFP KIPTGVGAER FSGNPSVPSS SVVAVSLKPQ HASSMSALTS NKSNALTSYP  480
DPVLHSKQQV KPVGETKVSK PDEKPEEQVQ GGQPFIEEKE QTEKILEDKV EENEQTRKIR  540
EDKADTRNQE TELEKQATVA KDPNPSTSNM EVVQTDQLGC HQPLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206PRRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.26
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903349.10.0uncharacterized protein LOC110818700 isoform X2
TrEMBLA0A2I4G1M51e-159A0A2I4G1M5_JUGRE; uncharacterized protein LOC109003916
TrEMBLA0A2N9FA761e-159A0A2N9FA76_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_21.260.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.22e-77MYB_related family protein