PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_21.207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bZIP | ||||||||
Protein Properties | Length: 322aa MW: 35457.9 Da PI: 9.7998 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.9 | 2.4e-14 | 239 | 299 | 3 | 62 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 + +r+rr++kNRe+A rsR+RK+a++ eLe + Le+eN++L k+++e+ k+ +++l + evm.model.supercontig_21.207 239 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENERLlKEKAERTKERYKQLMEK 299 679**************************************97256788888888888665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.5E-12 | 234 | 297 | No hit | No description |
SMART | SM00338 | 9.3E-10 | 237 | 301 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.5E-12 | 239 | 298 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.841 | 239 | 291 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.77E-16 | 241 | 287 | No hit | No description |
SuperFamily | SSF57959 | 7.03E-9 | 241 | 292 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 244 | 259 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MASSKVMPSS DSRNSDLSRR SSSSASSSSA NPQHQYQYQQ LSSSEQTKRS RSQNKSKFAS 60 TMTVDGILRD VYDANPPTES TLLDASITLI EAPAPAITAA AIDINRGQNQ SQNGSGPLAP 120 KSVDDVWREI VSGERKEMKE EVPDEMMTLE DFLAKAGAVE AVAEKKEEMD VKLQPERLSG 180 GVYAFDPVPP SPFQVEGSII GFANGVEVIG AGGSAASAVS GGGRGKRARL VLEPLDKAAQ 240 QRQRRMIKNR ESAARSRERK QAYQVELESL AVRLEEENER LLKEKAERTK ERYKQLMEKV 300 VPVIEKRKPP RVLRRVRSLE W* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_21.207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903452.1 | 0.0 | G-box-binding factor 4-like | ||||
Swissprot | P42777 | 9e-64 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | V4SJ33 | 1e-116 | V4SJ33_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_21.207 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3852 | 28 | 55 | Representative plant | OGRP8662 | 7 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 1e-46 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_21.207 |