PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.177
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 291aa    MW: 32066.2 Da    PI: 7.1418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.177genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1291135755
                                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     Er RR+++++ f+ ++ llP +     +K +K++i+ +Av YIk Lq
  evm.model.supercontig_21.177  91 WTERERRKKMKNMFSSIQALLPDL----PPKADKSTIVDEAVSYIKRLQ 135
                                   57*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.33E-1383139No hitNo description
PROSITE profilePS5088813.67584134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1487150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1487147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-1089135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-992140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSALTTTPYG SSVSDDNFLG GVGDKLAGQE ANSTSNSVSV MEKEGVEEAP MDRKRTGKGS  60
MASGKSRVNG AAAENSTGER GCESEHEVHI WTERERRKKM KNMFSSIQAL LPDLPPKADK  120
STIVDEAVSY IKRLQHSLQT LQKRKQEKLT GSIATLMTDH FETSMVTPEV QKAMPEHYSK  180
EALLADHQAQ SSDNNLIGIS DMANRFPQCL PATNCFQFRT WFSPNVVINM NGNDAHFSIC  240
SVKKPGLLST LSYILQKHNL EVVSAQVSST QYHCMYMIHA HLKHDISDIT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903374.10.0transcription factor bHLH95-like
TrEMBLA0A1U8KXH96e-71A0A1U8KXH9_GOSHI; transcription factor bHLH95-like
STRINGevm.model.supercontig_21.1770.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-45bHLH family protein