PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_21.145
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 316aa    MW: 34578.9 Da    PI: 8.9637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_21.145genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-191358147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  evm.model.supercontig_21.145 13 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                                  79******************************.***********985 PP

2Myb_DNA-binding56.18.8e-1867109347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   ++T eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  evm.model.supercontig_21.145  67 PFTSEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                                   89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.631863IPR017930Myb domain
SuperFamilySSF466893.44E-3210106IPR009057Homeodomain-like
SMARTSM007171.1E-161261IPR001005SANT/Myb domain
PfamPF002491.9E-181358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-261466IPR009057Homeodomain-like
CDDcd001675.06E-161557No hitNo description
SMARTSM007179.9E-1564112IPR001005SANT/Myb domain
PROSITE profilePS5129420.9165114IPR017930Myb domain
PfamPF002495.9E-1567109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2367113IPR009057Homeodomain-like
CDDcd001674.87E-1267110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MASTRKDVVD RIKGPWSPEE DEALQRLVQN YGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRPFTS EEDETIIRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSSMSDG  120
LYDDAHVQQQ PLKRSASLGT GTNASGLYLN PSSPSGSDLS DSSLPGVSMS PVYRPLARTG  180
SLLPPTQHIE TASSTVTDPP TSLSLSLPGS DTCEVSNQVS GSNRAVNPTR VLPHQVTPSV  240
GPPQPPPPLQ VQTTSQGEFG YEKQFFSAEF LAVMQEMIRK EVRNYMAGIE QNGLCLQTEA  300
IRNAVVKRIG ISKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-42121143105C-Myb DNA-Binding Domain
1msf_C8e-42121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_21.145
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903563.10.0transcription factor MYB44-like
SwissprotO231605e-99MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A067KZQ61e-171A0A067KZQ6_JATCU; MYB family protein
STRINGevm.model.supercontig_21.1450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.17e-80myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]