PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_21.100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 24956.2 Da PI: 8.6603 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.2 | 3.4e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C+++Cvl+ ++ +++q +++ +++k+FG+s +++l++a+p+++r+++++sl+yeA+ r+ +Pv+Ga evm.model.supercontig_21.100 2 SCNGCRVLRKGCSENCVLRSCLhwiesAEAQGNATLFLAKFFGRSDLMSLISAVPQSQRPALFQSLLYEACGRTVNPVNGA 82 6*********************9999777889************************************************* PP DUF260 77 vgvilklqqqleqlkaelallk 98 vg++++++++++q+++e++l++ evm.model.supercontig_21.100 83 VGLLSTGNWHVCQAAVETVLAG 104 ****************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.881 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCVLR SCLHWIESAE AQGNATLFLA KFFGRSDLMS LISAVPQSQR 60 PALFQSLLYE ACGRTVNPVN GAVGLLSTGN WHVCQAAVET VLAGGPLRPI PGVLTGAWTA 120 NSNESSDGFS AVACTGRSAY PQSSRPSITS HASWEGREPS DLGLSLTLRG RRGRGRSCSQ 180 VERPNVYPQP SFYSGESEVT TMTMRTTASF EGGGDDRRMR GVSERKLLNL FV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_21.100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021903483.1 | 1e-170 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SZE8 | 8e-66 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A067LAV8 | 2e-86 | A0A067LAV8_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A1R3H2K1 | 2e-86 | A0A1R3H2K1_COCAP; Uncharacterized protein | ||||
STRING | evm.model.supercontig_21.100 | 1e-170 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 6e-67 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_21.100 |