PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_209.41 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Trihelix | ||||||||
Protein Properties | Length: 239aa MW: 26785.5 Da PI: 10.5501 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.7 | 1.3e-12 | 15 | 110 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........rergferspkqCkekwenlnkrykkikegekkr 71 +W+++ + +Lie ++ +l+rg+l++++W+ev++++ + + r+ +qCk++++ l+k+yk +k++ + evm.model.supercontig_209.41 15 CWSEDATFTLIESWGDRFLQLNRGNLRQKHWQEVANAVndrhvhvsaaGKPQPFRTDIQCKNRIDTLKKKYKIEKARVLDS 95 7*************************************88888887653333357889***************99987666 PP trihelix 72 tsessstcpyfdqle 86 +s++ +f l+ evm.model.supercontig_209.41 96 GGSYTSSWLFFPGLD 110 566667899998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-23 | 14 | 112 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDAVAGTPSS GRDDCWSEDA TFTLIESWGD RFLQLNRGNL RQKHWQEVAN AVNDRHVHVS 60 AAGKPQPFRT DIQCKNRIDT LKKKYKIEKA RVLDSGGSYT SSWLFFPGLD ALLGPNFPTA 120 GTSPPVTIPK FTPPALAISP IPSSRSSGGS GSTRRRKRTR TVESEVGYRE LADAIDRLGE 180 IYKRVEERKQ KQMVELEKHR MQFAKDLECQ RMQLFVETQV QLHKLKRAAA KRSSAGKT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_209.41 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887166.1 | 1e-152 | trihelix transcription factor ASIL2 isoform X2 | ||||
Swissprot | Q9LJG8 | 4e-33 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A371GYU8 | 4e-88 | A0A371GYU8_MUCPR; Trihelix transcription factor ASIL2 (Fragment) | ||||
STRING | evm.model.supercontig_209.41 | 1e-178 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9635 | 23 | 34 | Representative plant | OGRP487 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 5e-52 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_209.41 |