PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_209.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 22613.7 Da PI: 8.7014 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.3 | 1e-27 | 19 | 87 | 1 | 69 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69 +Ca+Ck++r+kC++dC+lapyfp +++++f++vhk+FG+snv+kl+++l+ +++++a++slv+eA +r+ evm.model.supercontig_209.3 19 PCASCKHQRKKCNNDCILAPYFPIDKNREFQVVHKVFGVSNVQKLIRNLKGDDQKKAVESLVWEASCRQ 87 7*****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.343 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.4E-27 | 19 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MQGDNENNSS NTIGGTHPPC ASCKHQRKKC NNDCILAPYF PIDKNREFQV VHKVFGVSNV 60 QKLIRNLKGD DQKKAVESLV WEASCRQKIQ YKELMENTKE SMMQLPGQGA TMFKLGMPMM 120 GWNGNHEMIN NNNNNNMLNF NQENNKLIFD SNTYYYPSTN IEKLKNDHVG VTVTPQIQQQ 180 QQMQYPINQF YLPGKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-18 | 9 | 88 | 1 | 80 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-18 | 9 | 88 | 1 | 80 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_209.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824188.1 | 9e-49 | PREDICTED: LOB domain-containing protein 2-like | ||||
Swissprot | Q9LNB9 | 1e-30 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A2I4EXR8 | 2e-47 | A0A2I4EXR8_JUGRE; LOB domain-containing protein 2-like | ||||
STRING | evm.model.supercontig_209.3 | 1e-145 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-31 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_209.3 |