PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_209.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 245aa MW: 26578.4 Da PI: 7.2571 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.8 | 9.6e-35 | 23 | 120 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...e 74 ++kkdrhski T++g++dRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ se+ + evm.model.supercontig_209.13 23 TAKKDRHSKILTSKGPKDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDKLNQLppqenH----SESpgyN 99 78**************************************************************533220....3332333 PP TCP 75 aesssssasnsssg.........k 89 ++s + +s + + evm.model.supercontig_209.13 100 PASTINFQS---YPqdiiistnpN 120 333333333...222334443321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-31 | 23 | 96 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.19 | 25 | 83 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGMKSNGGDN ILNFNGGNIL RSTAKKDRHS KILTSKGPKD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLINKAKSAI DKLNQLPPQE NHSESPGYNP ASTINFQSYP QDIIISTNPN 120 RTQDLGLSLQ SFQNSPLNTS HISSTDQTQF LNSAPVGFVS NFQRSMVGWS STSPLPASQR 180 EIFGQGLTSF PQSGDDMPIG SAIVGTRYVS DGLPAFHFPF LIHGEEESGG VSDTPSSSPP 240 DSNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 30 | 83 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 30 | 83 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_209.13 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887176.1 | 1e-179 | transcription factor TCP10-like | ||||
Swissprot | O82277 | 1e-39 | TCP10_ARATH; Transcription factor TCP10 | ||||
TrEMBL | A0A1Q3C6T3 | 3e-71 | A0A1Q3C6T3_CEPFO; TCP domain-containing protein | ||||
STRING | evm.model.supercontig_209.13 | 1e-178 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14158 | 19 | 24 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 5e-42 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_209.13 |
Publications ? help Back to Top | |||
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