PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2085.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 304aa    MW: 33657.7 Da    PI: 5.6972
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2085.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.55.5e-22192232141
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL 41 
                                   k+r+rWtpeLHe+Fveav+qLGGse+AtPk +l+lm+v+g 
  evm.model.supercontig_2085.1 192 KQRMRWTPELHESFVEAVNQLGGSERATPKGVLKLMNVEGS 232
                                   79************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-9190232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-18190231IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-14192231IPR006447Myb domain, plants
PfamPF002492.1E-5194231IPR001005SANT/Myb domain
PfamPF143793.1E-9252273IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTNPMSSQAP PLVPDSQTVG HLFSSSRGLP HSMTLASVSS RERNYGKFPL ISQSSSGGDS  60
FPQLLRSGSS LPTNRASRTE MQSRALINRP EEGKDISWSI DSLQDFLDLP ENIPVQTVQM  120
ESSKGAVASE DHSKRTDWQE WADQLISADD TLEQNWSELL CEFNAQEPKP KTVSSGEFSA  180
IANPLSNAPS NKQRMRWTPE LHESFVEAVN QLGGSERATP KGVLKLMNVE GSSEKKSIPL  240
DDVKSLDLKT SMSITEALRL QMEVQKQLHE QLEFPLRWYS KQNSTGLLQG FEGFHGKIKV  300
RLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-17192231140Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-17192231140Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-17192231140Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-17192231140Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-17192231241Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889295.10.0myb family transcription factor PHL13-like isoform X2
TrEMBLA0A3N7GC884e-94A0A3N7GC88_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_2085.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.21e-54G2-like family protein