PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_2067.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 50aa MW: 5579.47 Da PI: 10.2828 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.5 | 9.7e-11 | 5 | 34 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE+ l +v ++G g W+tI + evm.model.supercontig_2067.2 5 KQKWTPEEEAALRAGVVKHGAGKWRTILKD 34 79*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.952 | 1 | 50 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-12 | 2 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 4 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.8E-8 | 5 | 33 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.15E-13 | 6 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 50 aa Download sequence Send to blast |
MGAPKQKWTP EEEAALRAGV VKHGAGKWRT ILKDPEFSGV LYLRSNVDLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_2067.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889377.1 | 9e-30 | telomere repeat-binding factor 1-like | ||||
Refseq | XP_028123872.1 | 5e-29 | telomere repeat-binding factor 1-like | ||||
Swissprot | Q8VWK4 | 5e-26 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A438D794 | 4e-27 | A0A438D794_VITVI; Telomere repeat-binding factor 1 | ||||
STRING | XP_010542089.1 | 3e-27 | (Tarenaya hassleriana) | ||||
STRING | Gorai.005G230800.1 | 3e-27 | (Gossypium raimondii) | ||||
STRING | evm.model.supercontig_2067.2 | 2e-29 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16580 | 8 | 12 | Representative plant | OGRP855 | 16 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-28 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_2067.2 |
Publications ? help Back to Top | |||
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