PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_202.7

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

NAC

Protein Properties

Length: 142aa MW: 16119.5 Da PI: 9.8851

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_202.7	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.7	1.5e-25	60	130	57	128
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 fF++ d+ky++g+r n+atk+g Wkatgkd++++s + +l+g kktLvfy+grap+ +kt+ vmheyr evm.model.supercontig_202.7 60 PELFFCPLDRKYPNGSRLNKATKAGHWKATGKDRKITS-GVNLIGRKKTLVFYTGRAPEEKKTNCVMHEYRT 130 447*********************************.999**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.702	1	141	IPR003441	NAC domain
Pfam	PF02365	2.3E-11	46	129	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-25	63	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MTTNKERIEN LEASMDKLQG RLSRMEVGFA AKFYQIEDIL KRLTDMLLVN CERSSSNIDP 60 ELFFCPLDRK YPNGSRLNKA TKAGHWKATG KDRKITSGVN LIGRKKTLVF YTGRAPEEKK 120 TNCVMHEYRT TEDDLNGTKP G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	63	132	75	144	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	63	132	75	144	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	63	132	75	144	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	63	132	75	144	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	63	132	78	147	NAC domain-containing protein 19
3swm_B	1e-22	63	132	78	147	NAC domain-containing protein 19
3swm_C	1e-22	63	132	78	147	NAC domain-containing protein 19
3swm_D	1e-22	63	132	78	147	NAC domain-containing protein 19
3swp_A	1e-22	63	132	78	147	NAC domain-containing protein 19
3swp_B	1e-22	63	132	78	147	NAC domain-containing protein 19
3swp_C	1e-22	63	132	78	147	NAC domain-containing protein 19
3swp_D	1e-22	63	132	78	147	NAC domain-containing protein 19
4dul_A	1e-22	63	132	75	144	NAC domain-containing protein 19
4dul_B	1e-22	63	132	75	144	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269\|PubMed:19947982, ECO:0000269\|PubMed:20156199, ECO:0000269\|PubMed:22967043}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_202.7

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238607	9e-91	AC238607.1 Carica papaya BAC clone 53G04, complete sequence.
GenBank	CP010988	9e-91	CP010988.1 Carica papaya chromosome Y sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021909576.1	2e-40	NAC domain-containing protein 62-like
Swissprot	Q9SCK6	2e-34	NAC62_ARATH; NAC domain-containing protein 62
TrEMBL	A0A061G1N1	9e-38	A0A061G1N1_THECC; NAC domain class transcription factor, putative isoform 2
TrEMBL	A0A061G9N7	1e-37	A0A061G9N7_THECC; NAC domain class transcription factor, putative isoform 1
TrEMBL	A0A1U8JU51	1e-37	A0A1U8JU51_GOSHI; NAC domain-containing protein 62-like
STRING	evm.model.supercontig_202.7	1e-102	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	7e-37	NAC domain containing protein 62

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_202.7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]