PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2011.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 471aa    MW: 50964.2 Da    PI: 4.6605
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2011.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31221279259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  evm.model.supercontig_2011.1 221 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 279
                                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31214281IPR003657WRKY domain
PROSITE profilePS5081133.109215281IPR003657WRKY domain
SuperFamilySSF1182903.14E-26218281IPR003657WRKY domain
SMARTSM007741.4E-37220280IPR003657WRKY domain
PfamPF031061.0E-25222279IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEDYQGDLTD IFRAISHGVN TNIPSHDHDH DHNWFVSDNP LMDFPSSTHI LADNTSFGDP  60
FLNMRDPLLL QHPVPATAPA PAPASDYFST IVEDASFSGG STSTSSSVNL GQSILEDEMK  120
GSCSVFSRIQ ISSCSDVGSN QMAEVIAGGS PTGIKPAATG GGEMNNVNVK SCLVDNTTSS  180
LQISSPRNLG IKRRKSQVKK VVCIPAPAAA NSRSSGEVVP SDLWAWRKYG QKPIKGSPYP  240
RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSQPSKTNN  300
SKTSSSSSSP PENNKQLDQI SSSTNDLITS SPVNPGGGGG SCSATTNTTT TACVKEEFEM  360
DDDDREISQH GDQDDQTFND KSYKPALLPD HHTHQAGDYL VGLDELESDP LNLLLSQGFN  420
NDDDDDDVDD PQKDNKNNKT VVDPFSDLFD WAVDSNTNNN RTCFGQPNNT X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-26195282280Disease resistance protein RRS1
5w3x_D6e-26195282280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889608.10.0probable WRKY transcription factor 14
TrEMBLA0A140H8R11e-123A0A140H8R1_MANES; WRKY transcription factor 57
TrEMBLA0A1Q3BCG31e-123A0A1Q3BCG3_CEPFO; WRKY domain-containing protein
STRINGevm.model.supercontig_2011.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-88WRKY DNA-binding protein 35