PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_200.36
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 295aa    MW: 33396 Da    PI: 6.5237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_200.36genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09113168455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksLq 55 
                                   +h   Er RR+++++ f++L  l+ +++    +   +K +K++i+ +Av  Ik Lq
  evm.model.supercontig_200.36 113 SHLWTERERRKKMKNMFDNLHGLMLTNPrgmmRHVPQKADKITIVDEAVTWIKGLQ 168
                                   56668*********************777***9999*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-12101180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12108185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.112109167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.48E-10112172No hitNo description
PfamPF000104.0E-7113168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-6117173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEKDDWDVSG FLWETENQLW DFFNFDFSAV ETQIKYPMDP PPPPPPPPCF TSNLSLNPPT  60
VPSPDLDQPQ TAAPAAAAAA LEKEKGKKVI GVDEKKEKEK GKKEGKTEAN HESHLWTERE  120
RRKKMKNMFD NLHGLMLTNP RGMMRHVPQK ADKITIVDEA VTWIKGLQQD VQKLEARKEL  180
EKRKRESQDP ITAHKLAMDS TQPTLIDQPS YGNNNNNNNI VPEFTNPTPV GFKVWFSENL  240
NLNICGDEAQ ISLCSVKKQG LFTAICSVLE KHKLELLSAS VPSDSNRRMT MMQVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_200.36
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887311.10.0transcription factor bHLH95-like, partial
STRINGevm.model.supercontig_200.360.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-25bHLH family protein