PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_20.206
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Nin-like
Protein Properties Length: 767aa    MW: 85616.4 Da    PI: 5.393
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_20.206genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK21.16.1e-07583607226
                        RWP-RK   2 ekeisledlskyFslpikdAAkeLg 26 
                                   ek+isl++l++yF++++kdAAk++g
  evm.model.supercontig_20.206 583 EKTISLQVLRQYFAGSLKDAAKSIG 607
                                   89*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542777.61E-24664755No hitNo description
Gene3DG3DSA:3.10.20.2401.2E-23667748No hitNo description
PROSITE profilePS5174525.083668751IPR000270PB1 domain
SMARTSM006662.0E-27668751IPR000270PB1 domain
CDDcd064073.59E-43669750No hitNo description
PfamPF005643.4E-18669750IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MEGGGFTPDS SFGTFPDTAM DLDFMDELLF DGCWLETMDG NNFMQSGSSF SAAMNEPSQF  60
LRLSKPNTAD LAQSESFLVQ GTEVSRRYWI SPNSPSSVKD RLMQAIGYLK DLMEERDFLI  120
QIWVPVKRGG KHVLTTEEQP FSFNPKYKSL EIYRDVSKSY SFPAEEDSKD SVGLPGRVFL  180
GKLPEWTPDV RFFRKDEYPR IKFAQQCDVR GSLALPVFER GSGTCLGVVE IVTTTQKINY  240
RPELENVCKA LEAVDLRSSH NFSPPSVEVY NELYQAALPE IAEVLESVCK PHRLPLALTW  300
APCLQQSKPG CRHSDENYSQ CVSTLDSACI VADEDTRGFL EACSEHHLLL GQGIVGRAFK  360
TSKQCFATNI TYFSKTNYPL AHHARMLKLH AALAIPLRSV YTGSVEFVLE LFLPKDCLDD  420
EEKKQMLNLL SAVVQQNFRS IHVTMDKELE EEVILPVREI TLAPDAIVKE DSSNFVSSHL  480
QETTPEESTW IAHMMEAQQK GKGVSLSWEY QKEEPKEGFN LTTHWDDSQV ELYHKQVFSG  540
FEQIPQSSGP RSSADAGGGS SSSGGRRTSG NRKTGEKRRT KSEKTISLQV LRQYFAGSLK  600
DAAKSIGEDP GGVLKRARSD AELHALLQEE PKSLARSQSQ KTFGEHPTLE TLPPLPTTGG  660
RNLRAGGGFR IKATFGEYKI RFSLPPNWGF SDLQQEIAHR FNIDDVNKID LKYLDDDCEW  720
VLLTCDADLE ECIDIHKSSQ SNTIKIALHQ ASQPRLGSSF GSTGPS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_20.206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903705.10.0protein NLP2 isoform X1
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A061DXA40.0A0A061DXA4_THECC; Plant regulator RWP-RK family protein, putative isoform 1
TrEMBLA0A061DXL20.0A0A061DXL2_THECC; Plant regulator RWP-RK family protein, putative isoform 2
STRINGevm.model.supercontig_20.2060.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein