PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_2.327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 28111.8 Da PI: 8.0019 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.6 | 6.8e-41 | 54 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i + evm.model.supercontig_2.327 54 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPECQRADAANSLVYEANLRLRDPVYGCMGAICA 135 7********************************************************************************* PP DUF260 83 lqqqleqlkaelallkeel 101 lqqq++ l+ael+++++e+ evm.model.supercontig_2.327 136 LQQQIQALQAELNAVRNEI 154 **************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.917 | 53 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-41 | 54 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSRDREIFVD EIGKKIKREI STVVTGPADA YNSDQMGRRH VALSPPGIFN TITPCAACKL 60 LRRRCAEECP FSPYFSPHEP HKFAAVHKVF GASNVSKMLM EVPECQRADA ANSLVYEANL 120 RLRDPVYGCM GAICALQQQI QALQAELNAV RNEILKYKYG SDHQATNTNM IINPNSTHHA 180 ALINPNSVAA ISQNNTLPNL NPPRCSPPPP PPLPPPPSIV ISSSSSTTTA SSMYNQQPSS 240 SGGYSSISSD QNNVPYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-42 | 54 | 161 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-42 | 54 | 161 | 11 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_2.327 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909979.1 | 0.0 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 7e-75 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 1e-74 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2P5AHJ8 | 8e-91 | A0A2P5AHJ8_TREOI; Wilm's tumor protein | ||||
STRING | evm.model.supercontig_2.327 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-75 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_2.327 |
Publications ? help Back to Top | |||
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