PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.296
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 853aa    MW: 93404.5 Da    PI: 6.9052
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.296genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19339439199
                                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT- CS
                           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegD 78 
                                  f+kvl+ sd+++ grlvlpk +ae++   +++ e+  l+++d +g++W++++++  +++s++yvl+ G     ++ +Lk+gD
  evm.model.supercontig_2.296 339 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPLKIQDVKGKEWSFQFRFwpNNNSRMYVLE-GVTPCIQSMQLKAGD 419
                                  99**************************666667778***************9989999999***9.*************** PP

                                  EEEEEE-SSSEE..EEEEE-S CS
                           B3  79 fvvFkldgrsefelvvkvfrk 99 
                                  +v+F++++  +++lv++++++
  evm.model.supercontig_2.296 420 TVTFSRID-PSGRLVIGFRKA 439
                                  *****987.888899999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-30335441IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-21336439IPR015300DNA-binding pseudobarrel domain
CDDcd100173.35E-24337438No hitNo description
PfamPF023625.8E-17339439IPR003340B3 DNA binding domain
SMARTSM010192.1E-23339440IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561339440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MGKFDFEGGG GSQMGSKICM NTSCATATTH EWKKGWRLGS GGYADLCFRC GSAYESFIFC  60
DTFHSEESGW RKCYFCSKRL HCGCIASESL VQLLDYGGVG CTGCAKSSQL NLVRRNEISH  120
GFGGLTINTT NNVQVIGAEN GNNVDGERLS QLCKIMEANE PDLFPQSQRG DTNVSFNQDR  180
QGEFMHPIGE IGTSLSNAIK SSSGSSKFAK PDNSRSILDT RNMCDSLAQP SLSMTLGAPS  240
GTLSRGLPFS SGIADGQEES KGPSFQQGQQ SRPILPKPSR SNTALSDTNK SAVPHMRIAR  300
PPVEGRGKNH LLPRYWPRIT DQELQQLSGD LNSNIVPLFE KVLSASDAGR IGRLVLPKAC  360
AEAYFPPINQ SEGLPLKIQD VKGKEWSFQF RFWPNNNSRM YVLEGVTPCI QSMQLKAGDT  420
VTFSRIDPSG RLVIGFRKAT NNEDQLDSRT SAIPNCTSLK ETSYNGGIES LHTVSGYSGI  480
VGTMKGGMDP HINALSEHLS SADIDIGWHK NESHGDRNGD SSHQSILNAE KKRTRNIGSK  540
SKRLLMHSED VLELRLTWEE AQDLLRPPPT SKPSVVTIED LEFEEYDYGR SDKILKEKYL  600
PLEDQSTDFK RRRNAESQKA DQEHEPSGLD ALASAAVLGD NLGESGEQSV GATTKHPRHR  660
PGCTCIVCIQ PPSGKGKHKP TCTCNVCMTV KRRFKTLMLR KKKRQSELEA EAAQKEQNDN  720
LNESELNAMT GYPLHKHLSD NEGSHNRIQG DVAESSNSID LNCHPQREEM QLEEPPISLM  780
SLLQAANIEN LMKQMTEQQA SLGPCLLSPA NGQSERHTPA ENGFVASLGR VGDGRSDEAL  840
RAAQSLDRSS IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-703174442129B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1690701KRRFKTLMLRKK
2690703KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909906.10.0B3 domain-containing transcription repressor VAL1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGevm.model.supercontig_2.2960.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69232440
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]