PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.187
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 411aa    MW: 45315.1 Da    PI: 6.068
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.187genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.42.4e-26219272155
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  kpr++W+ eLH++F++av+q+ G++kA Pk+il++m+v+gL++e+v+SHLQkYRl
  evm.model.supercontig_2.187 219 KPRVVWSLELHQQFISAVDQI-GIDKAAPKKILQVMNVPGLSRENVASHLQKYRL 272
                                  79*******************.********************************8 PP
2Response_reg75.91.5e-25391471109
                                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
                 Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtah 80 
                                  vl+vdD+ + +++ +q+l++ +y  v++++++ +al+ll+ek+  +Dl++ D+ mp+mdG++ll++   e  +lp+i+++a 
  evm.model.supercontig_2.187  39 VLVVDDDITCLRITEQILRRCNY-CVTTCSQAVAALTLLREKKgcFDLVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSAD 118
                                  89*********************.*******************************************6644.8********* PP

                                  TTHHHHHHHHHTTESEEEESS--HHHHHH CS
                 Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                                  g  +++   ++ Ga d+l Kp+ +eel +
  evm.model.supercontig_2.187 119 GITSTVMSGIRHGACDYLLKPIREEELKH 147
                                  **************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.4E-14616395IPR017053Response regulator B-type, plant
SuperFamilySSF521721.31E-3536164IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.7E-4136173No hitNo description
SMARTSM004489.2E-3037149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.94738153IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2239147IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.56E-2640152No hitNo description
PROSITE profilePS5129410.834216275IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-28217277IPR009057Homeodomain-like
SuperFamilySSF466894.84E-18217276IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-22219272IPR006447Myb domain, plants
PfamPF002492.1E-6221271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAALQIVDES SVNDNVFSFE WCKGTEVVVP DNFPAGLRVL VVDDDITCLR ITEQILRRCN  60
YCVTTCSQAV AALTLLREKK GCFDLVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADGI  120
TSTVMSGIRH GACDYLLKPI REEELKHIWQ HVVRKKLNEN KELENSGNLE ENDGNKRGND  180
DSKYTCANDG TVKAQKKRTN TNDEGDAEVE NKDPSTEKKP RVVWSLELHQ QFISAVDQIG  240
IDKAAPKKIL QVMNVPGLSR ENVASHLQKY RLYLKRLNGV AEEGGISSPL PGNIESNVQL  300
ASLGRYNIQA LAASGQLPPQ TIAALHAELL GRPAALLLLA RPQVLEQYNS SIAISSSYLT  360
FLLASHGLLL EKASCLLSFI TFTAEIMVML GKILSRRDVF GREKTGLVGW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21215278164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.187
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909791.10.0two-component response regulator ORR21-like
SwissprotQ8H7S71e-123ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A061E8051e-174A0A061E805_THECC; Two-component response regulator
STRINGevm.model.supercontig_2.1870.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-114response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]