PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.186
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ARR-B
Protein Properties Length: 647aa    MW: 70184.4 Da    PI: 6.5069
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.186genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.43.4e-28223276155
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  evm.model.supercontig_2.186 223 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 276
                                  79*******************.********************************8 PP
2Response_reg79.41.2e-26391471109
                                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEEST CS
                 Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtah 80 
                                  vl+vdD+ + +++++q+l++ +y  v++ ++++ al+ll+ek+  +D++l+D+ mp+mdG++ll++   e  +lp+i++++ 
  evm.model.supercontig_2.186  39 VLVVDDDATCLRIVEQMLRRCQY-YVTTSSQAKVALTLLREKKgcFDVVLCDVHMPDMDGFKLLEHVGLEM-DLPVIMMSDD 118
                                  89*********************.*******************************************6644.8********* PP

                                  TTHHHHHHHHHTTESEEEESS--HHHHHH CS
                 Response_reg  81 geeedalealkaGakdflsKpfdpeelvk 109
                                  g  + + + +k Ga d+l Kp+ +eel +
  evm.model.supercontig_2.186 119 GRTSAVMRGIKHGACDYLIKPIREEELKN 147
                                  **************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-15715628IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.2E-4136176No hitNo description
SuperFamilySSF521721.14E-3436161IPR011006CheY-like superfamily
SMARTSM004487.2E-2837149IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.18638153IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.6E-2339147IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.47E-2640152No hitNo description
SuperFamilySSF466891.16E-19220280IPR009057Homeodomain-like
PROSITE profilePS5129410.885220279IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29221281IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24223276IPR006447Myb domain, plants
PfamPF002491.6E-6225274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAALQRVAES SASASALSYG TCKGTEVVVP DKFPAGLRVL VVDDDATCLR IVEQMLRRCQ  60
YYVTTSSQAK VALTLLREKK GCFDVVLCDV HMPDMDGFKL LEHVGLEMDL PVIMMSDDGR  120
TSAVMRGIKH GACDYLIKPI REEELKNIWQ HVVRKKWNEN KELENSCSLE DNDRHKRGND  180
DSEYTSSVND GAEGTVKPQK KRTNAKEEDD GELENEDPST AKKPRVVWSV ELHQQFVTAV  240
NQLGIDKAVP KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQGGI SSPLCGNIES  300
NVKLASLGRY DIQALAASGQ IPPQTLAALH AELLGRPAGN LVSAVDQPPL LQASLQGPKC  360
IPVEHGVAFG QPLVKCQSNI PKHYQQSIMP AGDVPPELGA WPSNNNLVAV GHGSNLGGLS  420
SHNSNMLMDV LEQQQHLQQQ KQQQQSAFPD ANRSINVQPS CLVMPSQSAT SFQAGNSPAS  480
VNPNCVNRTA IIDYTLLSPQ SSNSSFTMGQ IPDADLRTSG VLSGYSAPGS ISAAASSISA  540
YAENSGHQQL RNSTIPFKTS RQCQHLFLIS LGNLGFVGNG TCIPSRFAVD EFESPMNNLS  600
HGKAFVENNG VRMKPEPNME FVDNAKVGTG VLQQFPSTDL MSVFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22219282164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021909759.10.0LOW QUALITY PROTEIN: two-component response regulator ORR21-like
SwissprotA2XE311e-160ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-160ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9T4M70.0B9T4M7_RICCO; Two-component sensor histidine kinase bacteria, putative
STRINGevm.model.supercontig_2.1860.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-119response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]