PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_2.121
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family BBR-BPC
Protein Properties Length: 286aa    MW: 31731.4 Da    PI: 10.1991
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_2.121genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind351.91.4e-10712801301
                    GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalae 69 
                                  mddd+ + rn+gyyep+ s+k nlglqlms +aer++k+    r+  l + + ++++++rd         m++    +++++
  evm.model.supercontig_2.121   1 MDDDALNIRNWGYYEPS-SFKGNLGLQLMSNMAERNTKPflpgRDPSL-MVGGNGTFHPRDcvvsetpmpMNY----AWINQ 76 
                                  99**9988********9.************************999999.************888888888888....88888 PP

                    GAGA_bind  70 rnkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkk 151
                                         +++k++++++ +++       +++vl++t+s++s+q      l++++   r+e+   +  iee ++++ e +++k
  evm.model.supercontig_2.121  77 -------HRDKFFNMIPGNTT-------NYNVLPETSSAQSMQI-----LQPPPSSSRDER--AVGRIEEPVPNK-EGAQSK 136
                                  .......7789******6664.......799************9.....888888866666..666777776665.555666 PP

                    GAGA_bind 152 krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233
                                  krq++  pk++kakk++k    +k+++++    +r+k  kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSa
  evm.model.supercontig_2.121 137 KRQSSGAPKTPKAKKPRK----PKDNNNPTV--QRVKPVKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSA 212
                                  799999*******99999....333444444..69*********************************************** PP

                    GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                  CCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
  evm.model.supercontig_2.121 213 CCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 280
                                  *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.6E-1101280IPR010409GAGA-binding transcriptional activator
SMARTSM012261.2E-1721280IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDDDALNIRN WGYYEPSSFK GNLGLQLMSN MAERNTKPFL PGRDPSLMVG GNGTFHPRDC  60
VVSETPMPMN YAWINQHRDK FFNMIPGNTT NYNVLPETSS AQSMQILQPP PSSSRDERAV  120
GRIEEPVPNK EGAQSKKRQS SGAPKTPKAK KPRKPKDNNN PTVQRVKPVK KSMDVVINGI  180
DMDISGIPIP VCSCTGTPQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS  240
QGAFKKVLEK LAAEGYNFAN PIDLRTHWAR HGTNKFVTIR VVHCC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_2.121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910059.10.0protein BASIC PENTACYSTEINE2-like
RefseqXP_021910060.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-125BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2I4G8A51e-163A0A2I4G8A5_JUGRE; protein BASIC PENTACYSTEINE2-like isoform X2
STRINGevm.model.supercontig_2.1210.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-119basic pentacysteine 2