PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_198.17

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

HB-other

Protein Properties

Length: 403aa MW: 44236.9 Da PI: 6.0689

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_198.17	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.6e-20	58	113	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+ L+++lgL+ qVk+WFqN+R+++k evm.model.supercontig_198.17 58 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKALSRELGLEPLQVKFWFQNKRTQMK 113 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-22	40	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.01E-19	45	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.39	55	115	IPR001356	Homeobox domain
SMART	SM00389	4.7E-18	56	119	IPR001356	Homeobox domain
CDD	cd00086	2.43E-18	58	116	No hit	No description
Pfam	PF00046	2.6E-17	58	113	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	90	113	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	2.75E-19	220	398	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MFEPNMFESH HLFDMTPKTS DSELIGKIRD DDYETKSGTE TAEANSGDDQ DPNQRPKKKR 60 YHRHTQRQIQ EMEAFFKECP HPDDKQRKAL SRELGLEPLQ VKFWFQNKRT QMKAQNERHE 120 NAILKAENEK LRAENNRYKE ALSNASCPNC GGPAALGEMS FDEQHLRIEN VRLKEEIDRI 180 SGIAAKYVGK PMDSFSQFSS HTRSLDLGVS SFGAQSGGRP PGIVLSAATS FWIPVSPKRV 240 FEFLRNENSR SEWDILSNGG LVQEMAHIAN GREPGNCVSL LRVNSANSSQ SNMLILQESC 300 TDSTGSYVIY APVDIAAMNI VLSGGDPDYV ALLPSGFAIL PDGPAGLNAT GIMDVGSGGS 360 LLTVAFQILV DSIPTAKLSL GSVATVNSLI KCTIERIKTA VI*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MFEPNMFESH HLFDMTPKTS DSELIGKIRD DDYETKSGTE TAEANSGDDQ DPNQRPKKKR  60
YHRHTQRQIQ EMEAFFKECP HPDDKQRKAL SRELGLEPLQ VKFWFQNKRT QMKAQNERHE  120
NAILKAENEK LRAENNRYKE ALSNASCPNC GGPAALGEMS FDEQHLRIEN VRLKEEIDRI  180
SGIAAKYVGK PMDSFSQFSS HTRSLDLGVS SFGAQSGGRP PGIVLSAATS FWIPVSPKRV  240
FEFLRNENSR SEWDILSNGG LVQEMAHIAN GREPGNCVSL LRVNSANSSQ SNMLILQESC  300
TDSTGSYVIY APVDIAAMNI VLSGGDPDYV ALLPSGFAIL PDGPAGLNAT GIMDVGSGGS  360
LLTVAFQILV DSIPTAKLSL GSVATVNSLI KCTIERIKTA VI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_198.17

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM477824	6e-42	AM477824.1 Vitis vinifera contig VV78X054788.8, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021887377.1	0.0	homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
Swissprot	Q93V99	1e-113	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	M8AUY8	1e-179	M8AUY8_AEGTA; Homeobox-leucine zipper protein ROC7
STRING	evm.model.supercontig_198.17	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM491	28	149
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	1e-116	protodermal factor 2

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_198.17

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]