PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_197.7
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 457aa    MW: 51643.5 Da    PI: 6.383
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_197.7genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.71.4e-139464511374
                         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                  l++lL++cA++v++++ e+a+  L+++s+las+dgd+mqR+aayfteA a r+++ +++l kal++++    +  e++ ++k
  evm.model.supercontig_197.7  46 LIHLLVACANHVAANNIENANIGLEQISHLASSDGDTMQRIAAYFTEAFADRMLKGWPGLHKALNSTKII--SIYEKILVQK 125
                                  689*************************************************************999887..59******** PP

                         GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                                  lf+e++P+lk++++++NqaI+ea+ege++vHiiD++  +++QW++Llq+L++Rpegpp+lRiTg+++    +ke le+++ r
  evm.model.supercontig_197.7 126 LFFELCPFLKLAYVITNQAIVEAMEGEKMVHIIDLNSFEPAQWVNLLQTLSARPEGPPHLRITGIHE----KKEVLEQMALR 203
                                  *******************************************************************....9********** PP

                         GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................ 214
                                  L+  Ae+l++pf+fn+ ++++le+l++e+Lrvk+gEalaV++vlqlh+ll                                
  evm.model.supercontig_197.7 204 LTGEAEKLDIPFQFNP-IVSKLENLDIESLRVKTGEALAVSSVLQLHSLLandddihqgkslstssnlrkvlqvnqrtlgdw 284
                                  ****************.7999************************************************************* PP

                         GRAS 215 .......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                                          ++++ +++  ++L+++++lsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++r s er+kvE++l
  evm.model.supercontig_197.7 285 lekdvlvYSPTADSQKMGRFLSALWGLSPKLMVITEQESNHNGCTLMERVMEALYFYAALFDCLESTVSRSSVERQKVEKML 366
                                  ******9666666666888*************************************************************** PP

                         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                                  +g+ei+n++aceg er+erhe+lekW  rle aGF++vpls++ + qa +ll+ ++ dgyr+++e+g l+++W+drpL+svS
  evm.model.supercontig_197.7 367 FGEEIKNIIACEGVERKERHEKLEKWILRLELAGFGKVPLSYHGMLQATRLLQSYGYDGYRIKDENGFLLICWQDRPLFSVS 448
                                  ********************************************************************************** PP

                         GRAS 372 aWr 374
                                  aWr
  evm.model.supercontig_197.7 449 AWR 451
                                  **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.71620431IPR005202Transcription factor GRAS
PfamPF035144.9E-13746451IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGQEEGSSSV TSSPLQFFSM MSLSPGIGSP YPWLRELKSE DRGLCLIHLL VACANHVAAN  60
NIENANIGLE QISHLASSDG DTMQRIAAYF TEAFADRMLK GWPGLHKALN STKIISIYEK  120
ILVQKLFFEL CPFLKLAYVI TNQAIVEAME GEKMVHIIDL NSFEPAQWVN LLQTLSARPE  180
GPPHLRITGI HEKKEVLEQM ALRLTGEAEK LDIPFQFNPI VSKLENLDIE SLRVKTGEAL  240
AVSSVLQLHS LLANDDDIHQ GKSLSTSSNL RKVLQVNQRT LGDWLEKDVL VYSPTADSQK  300
MGRFLSALWG LSPKLMVITE QESNHNGCTL MERVMEALYF YAALFDCLES TVSRSSVERQ  360
KVEKMLFGEE IKNIIACEGV ERKERHEKLE KWILRLELAG FGKVPLSYHG MLQATRLLQS  420
YGYDGYRIKD ENGFLLICWQ DRPLFSVSAW RFRRYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-70304532380Protein SCARECROW
5b3h_D1e-70304532380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_197.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887411.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A438GU360.0A0A438GU36_VITVI; Scarecrow-like protein 3
TrEMBLF6GX840.0F6GX84_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_197.70.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]