PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_195.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 28057.2 Da PI: 6.1079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.9 | 1e-45 | 4 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknra 77 lp GfrF Pt+eelv++yL++k+eg++ +l++vi+ + +++ ePwdLp+ +++++++w+fFs+r++++ +g r++r+ evm.model.supercontig_195.14 4 LPTGFRFYPTEEELVSFYLCHKLEGRRQDLHRVIPVISVFDNEPWDLPElageLCQGDTEQWFFFSPRQEREFRGGRPSRT 84 699***************************99***************9656754455777********************* PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t+sgyWkatg+ v+s++++++g+kkt+vfykgrap+g+kt+W mheyr+ evm.model.supercontig_195.14 85 TASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGRAPTGRKTKWKMHEYRA 135 *************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-48 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.918 | 4 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-25 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MEELPTGFRF YPTEEELVSF YLCHKLEGRR QDLHRVIPVI SVFDNEPWDL PELAGELCQG 60 DTEQWFFFSP RQEREFRGGR PSRTTASGYW KATGSPSYVY SSDNRVIGVK KTMVFYKGRA 120 PTGRKTKWKM HEYRAIEGAA NPSASAPKLR HEFSLHRIYV ISGSFRAFDR RPLEPVTRET 180 RPVSAGASTS SHVTTVAEKE SSSETSHSGG DHSDFQENIG QTDVEMVDGL EQPLWEWEKL 240 DLDWT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-35 | 4 | 137 | 17 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-35 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-35 | 4 | 137 | 17 | 144 | NAC domain-containing protein 19 |
4dul_B | 3e-35 | 4 | 137 | 17 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_195.14 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ478572 | 1e-164 | GQ478572.2 Carica papaya clone BAC DM105M02, complete sequence. | |||
GenBank | GQ478573 | 1e-164 | GQ478573.2 Carica papaya clone BAC SH18O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887487.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 9e-95 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | R4N7M3 | 1e-124 | R4N7M3_JATCU; NAC transcription factor 037 | ||||
STRING | evm.model.supercontig_195.14 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-98 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_195.14 |
Publications ? help Back to Top | |||
---|---|---|---|
|