PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_194.13
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 323aa    MW: 36543.4 Da    PI: 4.8042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_194.13genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20112161255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +grW+AeIrdp+    + +r +lg+++taeeAa  +++a+ +++g
  evm.model.supercontig_194.13 112 KYRGVRQRP-WGRWAAEIRDPR----SgTRLWLGTYDTAEEAAMVYDRAAIRIKG 161
                                   8********.**********94....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-31112170IPR001471AP2/ERF domain
PROSITE profilePS5103224.092112169IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22112169IPR016177DNA-binding domain
CDDcd000181.34E-35112169No hitNo description
SMARTSM003802.8E-39112175IPR001471AP2/ERF domain
PfamPF008471.4E-13112161IPR001471AP2/ERF domain
PRINTSPR003671.1E-10113124IPR001471AP2/ERF domain
PRINTSPR003671.1E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNQSISPSRM KYTEQRSVTV KHLKSSTRWT PLESPRLVRI SVTDCDATDS SSGEDNDDTC  60
RRHHQQRIKK LINEIKLQDS STSNTVRVKP RPKHCATGTG KSSRQYYPNG NKYRGVRQRP  120
WGRWAAEIRD PRSGTRLWLG TYDTAEEAAM VYDRAAIRIK GSDAHTNFPK PSVPTEIDVE  180
TISSYDSSRE SHSLCSPTSV LEFQAEAELR TELEPEPSSK PVNTAWPPVQ KPSEEPQGLQ  240
GDFLSSDPFL YSDIFNYEIP APIFFDEIIE AEPVSKQDEY GDDFSFKLDE DLGSCLWDVD  300
SYFEDPFPVE STLNPALTYL SQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-23110169363ATERF1
3gcc_A3e-23110169363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_194.13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887541.10.0ethylene-responsive transcription factor CRF5
TrEMBLA0A2P5YTL81e-91A0A2P5YTL8_GOSBA; Uncharacterized protein
STRINGevm.model.supercontig_194.130.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.12e-50cytokinin response factor 5