PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_192.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 30256 Da PI: 9.5271 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.5 | 7.6e-21 | 60 | 164 | 32 | 128 |
NAM 32 evikevdiykvePwdLpkkvkaeek..ewyfFskrdkkya..tgkrknratksgyWkatgkdkevlskkgelvglkktLvf 108 +i ++d+y+++P Lp +++ + + y+F++r+k +a + +r++r+++ g W++ dk++l+ +g+++g kktL f evm.model.supercontig_192.19 60 IFIIDADVYESHPAALPWELYPGLTcsYRYYFTRRHKVSAncNPNRPKRTVDCGWWRSDTGDKDILH-RGKVIGRKKTLSF 139 35999************544444343266******9998844578**********************.999********** PP NAM 109 y.....kgrapkgektdWvmheyrl 128 + ++++++++kt W+mheyrl evm.model.supercontig_192.19 140 FvykdtTKKRKDAQKTGWIMHEYRL 164 98888767888899*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.762 | 31 | 180 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-26 | 56 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-11 | 71 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MQVFATSPTR RQNVRTSRTK NTRRSLYPTA LFPAWRRSGR RAGAASTGLP VCWQSHLLNI 60 FIIDADVYES HPAALPWELY PGLTCSYRYY FTRRHKVSAN CNPNRPKRTV DCGWWRSDTG 120 DKDILHRGKV IGRKKTLSFF VYKDTTKKRK DAQKTGWIMH EYRLADDSFQ EWVLCKIYNK 180 PNKKNKNFEM ETADSSICET AILSENQLES ILVETDYQHG RSDNTPQNVE ERSYTEYVTD 240 WASLFWGDNE QPVANLQSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-13 | 61 | 186 | 48 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-13 | 61 | 186 | 48 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-13 | 61 | 186 | 48 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-13 | 61 | 186 | 48 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-13 | 61 | 186 | 51 | 174 | NAC domain-containing protein 19 |
3ulx_A | 6e-13 | 44 | 186 | 37 | 174 | Stress-induced transcription factor NAC1 |
4dul_A | 6e-13 | 61 | 186 | 48 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-13 | 61 | 186 | 48 | 171 | NAC domain-containing protein 19 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 149 | RKKTLSFFVYKDTTKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_192.19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887588.1 | 1e-178 | NAC domain-containing protein 67-like | ||||
STRING | evm.model.supercontig_192.19 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16333 | 2 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-14 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_192.19 |