PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_190.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | C2H2 | ||||||||
Protein Properties | Length: 170aa MW: 18299.2 Da PI: 10.4982 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H evm.model.supercontig_190.30 30 FTCKTCNREFPSFQALGGHRASH 52 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.56E-8 | 28 | 95 | No hit | No description |
Pfam | PF13912 | 2.2E-12 | 29 | 54 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 30 | 52 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.5E-10 | 72 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.5 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 73 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MANCLMLLSK VGKNDGVFTL GKPTQNGRVF TCKTCNREFP SFQALGGHRA SHKKPQLDQT 60 TQLPVSPKKP KTHECSICGL EFAIGQALGG HMRRHRGGGH SGNSESSSSE TKRSAVVMGP 120 ATLTMKKTSK IKRVFGLDLN LTPLENDCLR LGLGKVATTS HHHVVDCFM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 117 | TKRSAVVM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_190.30 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021887642.1 | 1e-123 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A438JY50 | 9e-52 | A0A438JY50_VITVI; Zinc finger protein ZAT12 | ||||
TrEMBL | F6HN90 | 9e-52 | F6HN90_VITVI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_190.30 | 1e-122 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 1e-35 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_190.30 |