PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.45
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 333aa    MW: 36970.5 Da    PI: 6.8657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.45genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY902e-28166225258
                                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                  dD ++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H +
  evm.model.supercontig_19.45 166 DDNFSWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDDDPYMFLVTYRGSHSC 225
                                  8****************************999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-27161226IPR003657WRKY domain
SuperFamilySSF1182901.7E-25163226IPR003657WRKY domain
SMARTSM007742.6E-36165227IPR003657WRKY domain
PROSITE profilePS5081121.207166224IPR003657WRKY domain
PfamPF031061.2E-25166225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEETISLIFH GLKKVKELEL NLPNYLANQP PHLLSSSLEE IITIFVEAKE RLVTSHESSS  60
QRVAMQNIDA SLQEWVIRSG ETKLLGGKAG EVSDQIMCRK DLDQGCSSTP FRNSNVNQAM  120
EVSDSGKLPI TCSSLQRPRR RRQDEEDRRT VRVAAPRMGN TDIPPDDNFS WRKYGQKEIL  180
GSRFPRAYYR CTHQKLYNCP AKKQVQRLDD DPYMFLVTYR GSHSCYTSAA AVPTTSTEMI  240
IATTTTTGIT TTDQSNVVTT STSGLSLNPL PLDRWLSVQV SVGGSSLSHR YDKETEYAAG  300
VVDMADAMFN SGSSGGNNTM EFIFPSQHPP QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18166225968OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904234.10.0WRKY transcription factor 55 isoform X1
STRINGevm.model.supercontig_19.450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-65WRKY DNA-binding protein 55