PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.44
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 287aa    MW: 32470.2 Da    PI: 6.6678
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.44genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.21e-25120180158
                                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                  ++Dg++WrKYGqK++ +++fprsY+rCt++   gC+++k+v+r ++dp+  ++tY g+H++
  evm.model.supercontig_19.44 120 VEDGHAWRKYGQKDILNAKFPRSYFRCTHKydqGCKATKQVQRLEHDPQQYQTTYIGDHTC 180
                                  58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-25109180IPR003657WRKY domain
PROSITE profilePS5081120.748115178IPR003657WRKY domain
SuperFamilySSF1182901.07E-23117180IPR003657WRKY domain
SMARTSM007749.8E-38120182IPR003657WRKY domain
PfamPF031068.9E-25121180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATLLEKPSA QKKRVIQELV KGQESANQLQ LLLHKHLKED GSVSVDELVE KILRSFTESL  60
SVVRSCELGE KLQQADSFVH DSPRTEDSGE SRKSTAAKDR RGCYKRKKNT KAWTVVSPLV  120
EDGHAWRKYG QKDILNAKFP RSYFRCTHKY DQGCKATKQV QRLEHDPQQY QTTYIGDHTC  180
IDTYKTPQIM SDSDSWVSYV VSNSSDSYTP SSSNQHPFSL SGLRQENKAS DEQVIWKDLM  240
PLNSAEPAVY SCSEATSTST HCLPMDFVVD FDTAFCFDHS GDFFNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-25114180268OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.44
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904233.10.0probable WRKY transcription factor 70
TrEMBLA0A1Q3BIP21e-86A0A1Q3BIP2_CEPFO; WRKY domain-containing protein
STRINGevm.model.supercontig_19.440.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40612757
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-46WRKY DNA-binding protein 70