PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.26
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CO-like
Protein Properties Length: 429aa    MW: 47926.7 Da    PI: 6.6492
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.26genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box284.5e-091659340
                     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                 +r C+ + +k+++++C  ++ +lC+ C  + H+       H++v
  evm.model.supercontig_19.26 16 ARACDSCIKKRARWYCAADDAFLCQACDGSVHSAnplarrHERV 59
                                 578*****************************657888888876 PP
2CCT67.63.4e-23373416144
                          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  evm.model.supercontig_19.26 373 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 416
                                  9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7651461IPR000315B-box-type zinc finger
SMARTSM003361.4E-101461IPR000315B-box-type zinc finger
PfamPF006432.9E-71659IPR000315B-box-type zinc finger
CDDcd000211.71E-91761No hitNo description
PfamPF062035.7E-18373415IPR010402CCT domain
PROSITE profilePS5101716.083373415IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MILTKNVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDGSVHSAN PLARRHERVR  60
LKTASGLIKN QSCTPTWHHG FTKKARTPRS GNKGRKDDNH NPIPLVPELG TDEISHEENE  120
EEHLLYRVPI FDPYVAEPSN ESVMGVEVGD VSKVVVSGSG YGEGESVLHG FLPSDMDLAE  180
FAADVESLLG RGLENGSFGM EELGLMDCRE DKETNKEWSL GVNDKSLVKT EEENEGTNFE  240
GAIRECHMGN EPFELSFDYD SPTTCGDEEE EKAVKGVVDK EDRSSASCRE EADGSKNKKK  300
KKKKNKVFLR LDYESVITAW ASQNSSWTTG ERPDFDPDES WPEFMGIKGA EVHQPYGEMM  360
GMLGHHGMGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRTAFAG  420
PGFPNLFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303KKKKKKK
2383399RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.26
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904249.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD01e-117COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA9PFG31e-172A9PFG3_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_19.260.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-103B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]