PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.238
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 426aa    MW: 45526.8 Da    PI: 5.9849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.238genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-1869114147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +g+W++eEde l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  evm.model.supercontig_19.238  69 KGPWSPEEDEVLTRLVGKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 114
                                   79******************************.***********985 PP
2Myb_DNA-binding55.81.1e-17121165147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r+++T eEd +++ a++ +G++ W++Iar ++ gRt++ +k++w++ 
  evm.model.supercontig_19.238 121 RKPFTDEEDRIIISAHAVHGNK-WAAIARLLP-GRTDNAIKNHWNST 165
                                   789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.77964115IPR017930Myb domain
SuperFamilySSF466892.16E-3166162IPR009057Homeodomain-like
SMARTSM007171.7E-1568117IPR001005SANT/Myb domain
PfamPF002491.1E-1669114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2670122IPR009057Homeodomain-like
CDDcd001679.51E-1571113No hitNo description
PROSITE profilePS5129425.711116170IPR017930Myb domain
SMARTSM007176.0E-17120168IPR001005SANT/Myb domain
PfamPF002492.4E-15121165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-24123169IPR009057Homeodomain-like
CDDcd001677.97E-13123166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MREETLHQNH EESPPTAADS ELGGASGGGA GGAETELGEL GIGEGSSGVA VGGGGGGGGA  60
VPVGGNRVKG PWSPEEDEVL TRLVGKFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPCLK  120
RKPFTDEEDR IIISAHAVHG NKWAAIARLL PGRTDNAIKN HWNSTLRRRY ADLGKLRPPP  180
SEKMEAIAIE RTKASSEETL SPGEVNPSKH LEGSDVIMED RPNQADEKGQ PEIQLASEQN  240
GDPIPPRPMA RVSAFSVYNP PTDPRTVSGM QRTVPCRGPL VQSSSRPDFV VARLLKELEG  300
EPTVPSQCGY GCCATPSGGH HSQTSLLGPE FVEYEETPSF SSQELISIAT DLNNIAWIRS  360
SVESSNAASQ RMPQGSASGS QIGIVKEHNM RNDHSLFDDG RNNLMGMMAD VISTQMPRQT  420
FCHAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40681696107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904088.10.0transcription factor MYB25-like
TrEMBLA0A061FMM31e-172A0A061FMM3_THECC; Myb domain protein 25, putative
STRINGevm.model.supercontig_19.2380.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-111myb domain protein 109