PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_19.217
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 296aa    MW: 33815.1 Da    PI: 9.1793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_19.217genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11123167347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   +WT++E+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
  evm.model.supercontig_19.217 123 PWTEDEHMRFLLGLLKYGKGDWRNISRNFVVSKTPIQVASHAQKY 167
                                   8*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512935.4671974IPR017884SANT domain
SMARTSM007178.7E-62072IPR001005SANT/Myb domain
SuperFamilySSF466895.53E-102275IPR009057Homeodomain-like
CDDcd001671.18E-42469No hitNo description
Gene3DG3DSA:1.10.10.602.8E-9114173IPR009057Homeodomain-like
PROSITE profilePS5129417.109116172IPR017930Myb domain
SuperFamilySSF466894.49E-14117171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16119171IPR006447Myb domain, plants
SMARTSM007172.9E-9120170IPR001005SANT/Myb domain
PfamPF002491.5E-8123167IPR001005SANT/Myb domain
CDDcd001672.85E-7123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
METLSPVSFM ASSNWFIQES RTIWTREENK RFESALAIYR EDTPDRWLKV VAMIPGKTVF  60
DVMKQYKELD DDISDIEAGK VPIPGYLSSS FTLELVNNRD FDAYRKKPVS GRASEQERKK  120
GVPWTEDEHM RFLLGLLKYG KGDWRNISRN FVVSKTPIQV ASHAQKYYQR QLSGGKDKRR  180
PSIHDITTFN LTNSAFSEHH SLSLFDHSDV LSPQHKLVSS MPKIGLDWNN PSDAALRTFN  240
SNSANMFKQS PFDIASNGLK LQGQNLYGSE YHRACNSRIQ CSKMNPEANQ IGYME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1424891176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_19.217
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904111.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-95DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061FLV91e-138A0A061FLV9_THECC; Duplicated homeodomain-like superfamily protein
STRINGevm.model.supercontig_19.2170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.19e-98MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]