PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_19.217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 296aa MW: 33815.1 Da PI: 9.1793 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.1 | 1.5e-11 | 123 | 167 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++G+g+W+ I+r + +t+ q+ s+ qky evm.model.supercontig_19.217 123 PWTEDEHMRFLLGLLKYGKGDWRNISRNFVVSKTPIQVASHAQKY 167 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 5.467 | 19 | 74 | IPR017884 | SANT domain |
SMART | SM00717 | 8.7E-6 | 20 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.53E-10 | 22 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-4 | 24 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-9 | 114 | 173 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.109 | 116 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-14 | 117 | 171 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-16 | 119 | 171 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.9E-9 | 120 | 170 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-8 | 123 | 167 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.85E-7 | 123 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
METLSPVSFM ASSNWFIQES RTIWTREENK RFESALAIYR EDTPDRWLKV VAMIPGKTVF 60 DVMKQYKELD DDISDIEAGK VPIPGYLSSS FTLELVNNRD FDAYRKKPVS GRASEQERKK 120 GVPWTEDEHM RFLLGLLKYG KGDWRNISRN FVVSKTPIQV ASHAQKYYQR QLSGGKDKRR 180 PSIHDITTFN LTNSAFSEHH SLSLFDHSDV LSPQHKLVSS MPKIGLDWNN PSDAALRTFN 240 SNSANMFKQS PFDIASNGLK LQGQNLYGSE YHRACNSRIQ CSKMNPEANQ IGYME* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 24 | 89 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_19.217 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904111.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-95 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A061FLV9 | 1e-138 | A0A061FLV9_THECC; Duplicated homeodomain-like superfamily protein | ||||
STRING | evm.model.supercontig_19.217 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4340 | 26 | 57 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 9e-98 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_19.217 |
Publications ? help Back to Top | |||
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